Carotenoids are structurally diverse pigments of biotechnological interest as natural colorants and in the prevention of human disease. The carotenoids present in 19 strains taxonomically related to the poorly described, nonphotosynthetic bacterial genus Hymenobacter, including 10 novel isolates cultivated from Victoria Upper Glacier, Antarctica, were characterized using high-performance liquid chromatography (HPLC). Nine chemically distinct carotenoids, present in various combinations irresolvable by conventional crude spectrophotometric analyses, were purified by preparative HPLC and characterized using UV-visible light absorption spectroscopy and high-resolution mass spectrometry. All major Hymenobacter carotenoids appear to be derived from a common backbone of 2-hydroxyflexixanthin and include previously unreported presumptive hexosyl, pentosyl, and methyl derivatives. Their distribution does not, however, correlate perfectly with 16S rRNA gene phylogeny. Carotenoid composition, therefore, may be strain specific and does not follow a strictly homogeneous pattern of vertical evolutionary descent.Carotenoids are isoprenoid pigments responsible for most natural red, orange, and yellow coloration (21, 30). Over 600 known structurally unique carotenoids are distributed throughout all major lineages of the tree of life (6, 30). Although best known as auxiliary components of the photosynthetic lightharvesting apparatus, many carotenoids are also produced by nonphotosynthetic bacteria and fungi, where they function as antioxidants (24,40,44) and in the stabilization of cellular membranes (9, 19). Higher animals lack the ability to synthesize carotenoids de novo and instead assimilate them from their diet (27).Recently, carotenoids have gained biotechnological interest as natural nutritional supplements (17, 29) and natural pigments (25), with a projected market in 2010 exceeding 1 billion U.S. dollars (13). Carotenoids are particularly well-known scavengers of reactive oxygen species, such as singlet oxygen (21, 35), and in humans contribute both to the maintenance of proper cell function and to disease prevention (21,27,34,35). Carotenoid biosynthesis has been well studied in many microorganisms (10, 32), particularly regarding the creation of recombinant biosynthetic pathways leading to the production of novel pigments (29, 41) with biotechnologically interesting properties, such as improved antioxidant activity (1, 26). These approaches require the identification of novel biosynthetic enzymes having expanded substrate ranges and activities, the discovery of which requires a clear understanding of carotenoid diversity and distribution. Most high-resolution structural studies are limited to the carotenoids present in single representative strains. Whether this approach captures all structural diversity is unknown because systematic, high-resolution studies of carotenoid composition in taxonomically related strains are lacking. The current understanding of the evolution of carotenoid metabolism (and that of other se...