ABSTRACT. A newly developed nested polymerase chain reaction (PCR) assay targeting the internal transcribed spacer (ITS) region of the ribosomal DNA was applied to detect and characterize Encephalitozoon cuniculi DNA from pet rabbits in Japan. The analysis was carried out using 257 urinary samples and 314 fecal samples collected from 307 pet rabbits in the age group of 1 month to 12 years from 30 different prefectures of Japan and 107 fecal samples and 3 urinary samples collected from 1-month-old rabbits from 3 breeding facilities in Japan. We detected 840-bp amplicons in 20 urinary samples (7.78%) from the pet rabbits of the 13 prefectures and in 1 urinary (33.3%) and 6 fecal (5.6%) samples from the rabbits of the 2 breeding facilities. The sequences (803 bp) of the 27 amplicons had no variations and completely coincided with the sequence of E. cuniculi genotype I. To the best of our knowledge, this is the first report on the detection and genotype characterization of E. cuniculi DNA from pet rabbits in Japan. Encephalitozoon cuniculi is an obligate intracellular parasite that is classified as a microsporidium, although this group is currently considered to comprise highly derived fungi descended from a zygomycete ancestor [15]. The organism mainly parasitizes rabbits and causes encephalitozoonosis with clinical signs of the disorders in the central nervous system, kidney and eye, which sometimes causes lethal damage to the animals. Furthermore, the organism has also been detected in other mammalian hosts, including rodents, horses, carnivores, non-human primates and humans [2,16]. Encephalitozoon cuniculi infections in rabbits show worldwide prevalence, and the seroprevalence has been reported to be 7.0% in breeding colonies in the U.S.A. [9], 59.2% in pet rabbits in England [10], 67.2% in pet rabbits in Italy [5] and 15% in farmed rabbits in Egypt [1]. In Japan, occasional cases of the infections have been reported since the 1990s [6,12,13,17], and a high seroprevalence of E. cuniculi has been recently reported in pet rabbits [11].Encephalitozoon cuniculi isolates from animal and human hosts are divided into 3 genotypes I, II and III on the basis of the differences in the nucleotide sequences of the internal transcribed spacer (ITS) region of ribosomal RNA (rRNA) gene [4]. Genotypes I, II and III are mainly detected in isolates from rabbits, mice and dogs, respectively. Genotypes I and III appear to have zoonotic potential, because these genotypes have been detected from humans as well as animals [16]. In Japan, although E. cuniculi genotype I has been isolated from a rabbit reared in a zoo and rabbits reared at a laboratory in an institute [7, 8], there is no report on genotype of E. cuniculi DNA in pet rabbits. This study was designed to detect E. cuniculi DNA and to characterize the genotype using urinary and fecal samples obtained from pet rabbits in Japan.
MATERIALS AND METHODS
Urinary and fecal samples of rabbits:We collected 257 urinary samples and 314 fecal samples from 307 healthy pet rabbits (age, 1...