F 0 F 1 -ATP synthases use the free energy derived from a transmembrane proton transport to synthesize ATP from ADP and inorganic phosphate. The number of protons translocated per ATP (H + /ATP ratio) is an important parameter for the mechanism of the enzyme and for energy transduction in cells. Current models of rotational catalysis predict that the H + /ATP ratio is identical to the stoichiometric ratio of c-subunits to β-subunits. We measured in parallel the H + /ATP ratios at equilibrium of purified F 0 F 1 s from yeast mitochondria (c/β = 3.3) and from spinach chloroplasts (c/β = 4.7). The isolated enzymes were reconstituted into liposomes and, after energization of the proteoliposomes with acid-base transitions, the initial rates of ATP synthesis and hydrolysis were measured as a function of ΔpH. The equilibrium ΔpH was obtained by interpolation, and from its dependency on the stoichiometric ratio,, finally the thermodynamic H + /ATP ratios were obtained: 2.9 ± 0.2 for the mitochondrial enzyme and 3.9 ± 0.3 for the chloroplast enzyme. The data show that the thermodynamic H + /ATP ratio depends on the stoichiometry of the c-subunit, although it is not identical to the c/β ratio. chemiosmotic theory | protonmotive force | bioenergetics | nanomachine C ells of all life kingdoms use H + -ATP synthases to produce the cellular energy carrier ATP from the energy of a transmembrane electrochemical potential difference of protons built up and maintained by proton transport mechanisms, such as the oxidative electron transport in mitochondria or the photoinduced electron transport in chloroplasts (1). The number of protons translocated for each synthesized ATP molecule (H + / ATP ratio) determines how large this difference of proton potential needs to be to maintain the high ATP/ADP ratio required by cell life. It is a key parameter in determining the flow of energy conversions in all living organisms. Ever since compelling experimental evidence in favor of a rotational mechanism for ATP synthases appeared (2-10), picturing them as molecular nanomachines in which two differently stepped motors (the membrane-embedded c-oligomer and the tripartite catalytic head) are connected by a central rotating shaft (γ/ε subunits), the general assumption has been that the H + /ATP ratio should coincide with the ratio of the number of proton-binding c-subunits to the three catalytic nucleotide-binding β-subunits. Structural data have shown that the number of c-subunit monomers varies according to species (ref. 11 and references therein), with numbers that are mostly not multiples of three. Consequences of the above assumption are (i) the H + /ATP ratio can vary among different species, and (ii) the H + /ATP ratio can be a noninteger number. The number of β-subunits is three in all F 0 F 1 analyzed so far, and the number of c-subunits varies between 8 and 15, resulting in predicted H + /ATP ratios between 2.7 and 5.0. To our knowledge, neither of the two assumptions above has yet been experimentally challenged with the required accu...