1. The main issue affecting the conservation of most pinniped species has been identified as interactions with fisheries and aquaculture. In South American waters in particular, this problem has not been well evaluated. Consequently, there is an urgent need for research and conservation measures to address the problem, particularly for species of conservation concern. 2. In this study, we reviewed published and unpublished research and observations from the last 25 years on operational and biological interactions between pinnipeds and fisheries and salmonid aquaculture activities in South American waters, and the conservation and management implications of these interactions in the near future. 3. Two species of pinnipeds are primarily involved in biological and operational interactions with fisheries and aquaculture in South America: the South American sea lion Otaria flavescens and the South American fur seal Arctocephalus australis. Although phocids are present in South American waters, there is no published research on conflicts between phocids and human activities. 4. Interactions between fisheries and pinnipeds have been reported by many countries. In South American waters, interactions mostly involve male and Keywords bycatch, mortality, pinnipeds, South America, South American sea lion Otaria flavescens, South American fur seal Arctocephalus australis