SummaryAutoimmune disorders are a complex and varied group of diseases that are caused by breakdown of self-tolerance. The aetiology of autoimmunity is multi-factorial, with both environmental triggers and genetically determined risk factors. In recent years, it has been increasingly recognized that genetic risk factors do not act in isolation, but rather the combination of individual additive effects, gene-gene interactions and geneenvironment interactions determine overall risk of autoimmunity. The importance of gene-gene interactions, or epistasis, has been recently brought into focus, with research demonstrating that many autoimmune diseases, including rheumatic arthritis, autoimmune glomerulonephritis, systemic lupus erythematosus and multiple sclerosis, are influenced by epistatic interactions. This review sets out to examine the basic mechanisms of epistasis, how epistasis influences the immune system and the role of epistasis in two major autoimmune conditions, systemic lupus erythematosus and multiple sclerosis.Keywords: autoimmunity; epistasis; genetic interaction; multiple sclerosis; systemic lupus erythematosus.In the era of systems biology, it is no longer possible to consider a gene in isolation: it is increasingly apparent that we must consider the interactions of a gene, including the interactions of its protein product, gene-environment interactions and gene-gene interactions. This is particularly relevant in complex human disease, where aetiology is multi-factorial. Autoimmune diseases are a varied group of complex disorders, with a strong genetic component, caused by breakdown of self-tolerance. This review sets out to examine the role of gene-gene interactions in autoimmunity: we review the known mechanisms of epistasis, and suggest where in the immune system they might act. We proceed to draw on disease-specific examples from two complex autoimmune conditions: multiple sclerosis (MS) and systemic lupus erythematosus (SLE).
Understanding epistasis: basic principlesThe term epistasis has been used for over 100 years, being first used by Bateson to describe the masking of one disease-causing mutation by the co-inheritance of a mutation at a separate locus. 1 The idea has since been expanded to include any statistical deviation from the additive combination of two loci, the definition that is most commonly used today. 2,3 At first, this might seem a complex mathematical concept, but this is not the case. In simple terms, epistasis is the phenomenon whereby the effect of one genetic variant is altered by another. The term can be used interchangeably with gene-gene interaction, or genetic interactions.It has been known for many years that disease-causing mutations show wide phenotypic variability, even within families, emphasizing that mutation outcome is dependent on the genetic background, as well as on environmental factors. There are many examples of simple Mendelian diseases showing phenotypic variability. An example in immunological disease comes from the study of X-linked lymphoproliferativ...