Capacitively coupled plasmas are routinely used in an increasing number of technological applications, where a precise control of the flux and energy distribution of ions impacting boundary surfaces is required. In the presence of dielectric wafers and targets the accumulation of charges on these surfaces can significantly alter the time evolution of the sheath electric field that is accountable for ion acceleration from the plasma bulk to the surfaces and, thus, lead to parasitic distortions of process relevant ion flux-energy distributions. We apply PIC/MCC simulations to provide insights into the operation, ion acceleration mechanisms, and the formation of such distributions at dielectric wafers for discharges in argon gas. The discharges are driven by a combination of a single high frequency (27.1~MHz) voltage signal and a low frequency (100~kHz) customized pulsed voltage waveform. The low frequency waveform includes a base square signal to realize narrow and controllable high energy peaks of the ion distribution, and steady-slope ramp voltage components. We discuss the distorting effect of dielectric surface charging on the ion flux-energy distribution and provide details about how the voltage ramps can restore its narrow peaked shape. The dependence of the surface charging properties on the low frequency pulse duty cycle and amplitude, as well as the high frequency voltage amplitude is revealed. The radial homogeneity of the ion flux is found to be maintained within ± 10 % around the mean value for all quantities investigated. The radial electric field developing at the edge of the dielectric wafer with finite width has only a small influence on the overall homogeneity of the plasma across the whole surface, its effect remains localised to the outermost few mm-s of the wafer.