Accurate quantification of pigments in mixtures is essential in all cases in which separation of pigments by chromatography is impracticable for one reason or another. An example is the analysis of in vivo formation of heavy metal-substituted chlorophylls in heavy metalstressed plants. We describe here a novel, accurate UV/ VIS spectrophotometric method for the quantification of individual chlorophyll derivatives in complex mixtures, which has the potential for universal applicability for mixtures difficult to separate. The method is based on the description of each pigment spectrum by a series of Gaussian peaks. A sample spectrum is then fitted by a linear combination of these "Gauss-peak spectra" including an automatic correction of wavelength inaccuracy and baseline instability of the spectrometer as well as a correction of the widening of absorbance peaks in more concentrated pigment solutions. The automatic correction of peak shifts can also partially correct shifts caused by processes like allomerization. In this paper, we present the Gauss-peak spectra for Quantification of pigments, especially chlorophylls, is a basic prerequisite for the study of many aspects of plant physiology. In most cases, only the main pigments (e.g., Chl a ϩ b in higher plants) 4 are estimated since in unstressed, healthy tissue other chlorophyll derivatives are present only in small amounts. In these cases, quantification can be done by photometry using linear equations like those published by Arnon (1).However, the situation becomes more difficult if the number of pigments with overlapping absorbance peaks increases, and if separation by HPLC is impracticable for one or another reason. One example is the quantification of pigments in extracts from heavy metal-stressed plants. It has been found that under conditions of heavy metal stress the central ion of Chl, Mg 2ϩ , can be exchanged by heavy metals, which causes inhibition of photosynthesis and thus constitutes an important damage mechanism in stressed plants (2, 3). Extracts of such plants contain a mixture of Mg-chlorophylls, hms-chlorophylls, and pheophytins. PublicaSupplementary data for this article are available on IDEAL (http:// www.idealibrary.com).1 Address for correspondence: Oderbruchstrasse 27, D-45770 Marl, Germany. E-mail: hendrik.kuepper@uni-konstanz.de.2 E-mail: spiller@iww.rwth-aachen.de. 3 E-mail: kuepper@sb-roscoff.fr. 4 Abbreviations used: Chl, chlorophyll; buffer A, buffer used for harvesting cells and preparing thylakoids for green gels, also used for samples, which were subsequently dried and extracted with cyclohexane or acetone; GPS, Gauss peak spectrum, i.e., the series of 4 -5 Gaussian peaks describing a chlorophyll spectrum in the region from 550 to 750 nm; hm, heavy metal; hms, heavy metal substituted; HPLC, high-performance liquid chromatography; Mg substitution, substitution of the natural central ion of Chl, Mg, by heavy metals; Pheo, pheophytin; PUO, parameter used for optimization; SQP, successive quadratic programming; SRCM, spectral reconst...