Measurements of chemical contaminants in caged (transplanted) and resident mussel populations have become a routine tool for monitoring and assessing the status and trends of coastal water quality. However, few long-term data sets are available to assess the comparability and efficacy of these two monitoring approaches. Three long-term independent data sets exist for Boston Harbor: the National Mussel Watch program has analyzed resident blue mussels (Mytilus edulis) from the Boston Harbor/Massachusetts Bay region for over twenty years, the Massachusetts Water Resources Authority has annually deployed caged (transplanted) mussels (Mytilus edulis) to assess bioaccumulation potential of sewage effluent discharged under its NPDES permit for over fourteen years, and the GulfWatch program has analyzed resident blue mussel populations for over twelve years. Together, these data provide consistent and comparable information on temporal and spatial changes in chemical contamination in Boston Harbor as steps were taken to reduce contaminant loading. The data also demonstrate the complementary nature of resident and caged (transplanted) mussels for assessing contaminant trends even when the basic approaches and sampling frequency differ. These fifteen year data sets demonstrate contaminant concentrations in mussels from Boston Harbor are similar and with few exceptions have significantly decreased since the early 1990s. The observed trends also demonstrate broad scale improvements to the quality of Boston Harbor and expand understanding of the response of coastal systems to interventions that reduce the load of chemicals to the ocean.Keywords: Mussel Watch, NOAA, GulfWatch, Status and Trends, caged mussels, The long-term data from the Mussel Watch program from 1986 through 2005 also reveal national, regional and local trends (Kimbrough et al., 2008). One of the local areas that received significant national attention in the late 1980s is Boston Harbor. Since then the Massachusetts Water Resources Authority (MWRA), the agency responsible for water supply and treatment of sewage for metropolitan Boston has completed several facility upgrades that improve the quality of sewage discharged to this system. These include termination of sewage sludge discharge in 1991, construction and operation of advanced primary treatment facilities since 1995, completing of advanced secondary treatment facilities in 2002, and relocation of the sewage effluent discharge 9.5 miles offshore in Massachusetts Bay (Werme and Hunt 2006;Rex et al. 2002). Over 95 percent of the sewage discharged from this outfall receives secondary treatment.The MWRA has also monitored the waters and sediments of Boston Harbor and Massachusetts Bay for trends in anthropogenic and other chemicals since the early 1990s (Tucker et al. 2006, Maciolek et al. 2006, Taylor 2005. Several studies have documented major improvements to the water and sediment quality , Bothner and Butman 2007, Zago et al. 2001, Bothner et al. 1998. One element of this long-term monitoring ...