The quantitation of newly induced TFT-resistant and TG-resistant mutants in TK"--3.7.2C mouse lymphoma cells was analyzed using conventional soft agar cloning and a newly developed technique that allowed for the sequestering, expression, and selection (SES) of mutants in Linbro wells. The conventional method of cloning in semi-soft-agar-supplemented nutrient medium was found to provide maximum mutant frequencies at 1-3 days post-treatment for TFT resistance and at 5-8 days for TG resistance. The length of time required to reach maximum expression was both mutagen-and dose-dependent. Following complete expression, TKdeficient mutants induced by some mutagens (eg, CH,I and 2-AAF) declined in frequency.The SES procedure, which avoids the potential changes in mutant frequency due to differential growth between mutants and the total population, was applied to assess the ability of conventional cloning methods to completely detect induced mutant frequencies. We determined that at the TK locus, and perhaps also at the HGPRT locus, EMS induced several times more mutants than are detected by conventional soft agar cloning. At least part of this difference in detected frequency appeared to be due to a significant population of slowly growing mutants which declined in frequency (because of their slow growth) during the time allowed for expression in the conventional assay procedure. An analysis of cells from mutant colonies isolated from both conventional cloning and the SES procedure revealed that TK-deficient mutants could be roughly divided into three categories: (1) tiny colony ( 7 ) mutants which were exceedingly slow-growing and were quantitated only in the SES analysis; (2) small colony (0) mutants which were slow growing; and Abbreviations: 2-AAF, 2-acetylaminofluorene; BUdR, bromodeoxyuridine; CH,l, methyl iodide; DMN, dimethylnitrosamine; EMS, ethyl methanesulfonate; G,, the post-DNA synthesis phase of interphase; HGPRT, hypoxanthineguanine phosphoribosyltransferase; IUdR, iododeoxyuridine; X, large colony (TK+ or TIT?; u, small colony (TK+ or TFT?; SES, sequester, express, and select; T, tiny colony (TK-Ior TFT'); TIT, trifluorothymidine; THMG, thymidine + hypoxanthine + methotrexate + glycine; TG, 6-thioguanine; TK, thymidine kinase.