Evaluation of Turkish apricot germplasm using SSR markers: Genetic diversity assessment and search for Plum pox virus resistance alleles

Gürcan, Kahraman; Öcal, Necip; Yılmaz, Kadir; Ullah, Shakir; Zengin, Yaşar

doi:10.1016/j.scienta.2015.07.012

Cited by 23 publications

(10 citation statements)

References 51 publications

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“…This variability is higher than that reported for P. salicina in other works, i.e., Mnejja et al (2004) and Klabunde et al (2014). It is also higher than that observed in other Prunus species such as almond (Fathi et al, 2008), cherry (Wünsch and Hormaza, 2002; Baris et al, 2017) and apricot (Gürcan et al, 2015).…”

Section: Discussioncontrasting

confidence: 53%

Analysis of Self-Incompatibility and Genetic Diversity in Diploid and Hexaploid Plum Genotypes

et al. 2019

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During the last decade, S -genotyping has been extensively investigated in fruit tree crops such as those belonging to the Prunus genus, including plums. In plums, S -allele typing has been largely studied in diploid species but works are scarcer in polyploid species due to the complexity of the polyploid genome. This study was conducted in order to analyze the S -genotypes of 30 diploid P. salicina , 17 of them reported here for the first time, and 29 hexaploid plums (24 of P. domestica and 5 of P. insititia ). PCR analysis allowed identifying nine S -alleles in the P. salicina samples allocating the 30 accessions in 16 incompatibility groups, two of them identified here for the first time. In addition, pollen tube growth was studied in self-pollinated flowers of 17 Tunisian P. salicina under the microscope. In 16 samples, including one carrying the Se allele, which has been correlated with self-compatibility, the pollen tubes were arrested in the style. Only in one cultivar (“Bedri”), the pollen tubes reached the base of the style. Twelve S -alleles were identified in the 24 P. domestica and 5 P. insititia accessions, assigning accessions in 16 S -genotypes. S -genotyping results were combined with nine SSR loci to analyze genetic diversity. Results showed a close genetic relationship between P. domestica and P. salicina and between P. domestica and P. insititia corroborating that S -locus genotyping is suitable for molecular fingerprinting in diploid and polyploid Prunus species.

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Section: Discussioncontrasting

confidence: 53%

Analysis of Self-Incompatibility and Genetic Diversity in Diploid and Hexaploid Plum Genotypes

et al. 2019

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“…Compared to dominant markers, SSR markers are co-dominant, highly reproducible, multi-allelic, and widely used in plant sciences (Hajmansoor et al, 2013) for germplasm characterization (Varshney et al, 2005;Peng et al, 2015;Queiroz et al, 2015), identification of genetic diversity (Gurcan et al, 2015;Jo et al, 2015;Mahjbi et al, 2016;Mornkham et al, 2016;Neiva et al, 2016), germplasm fingerprinting (Zhang et al, 2015), and integration of genetic linkage maps (Lai et al, 2013). For C. sinensis, SSR markers have been widely used to identify germplasm genetic diversity (Taniguchi et al, 2014), construction of linkage maps (Tan et al, 2013) and DNA-fingerprinting (Ujihara et al, 2009;Ma et al, 2010).…”

Section: Introductionmentioning

confidence: 99%

Genetic relationships in a germplasm collection of Camellia japonica and Camellia oleifera using SSR analysis

Zhao¹,

Ruan²,

Ding³

et al. 2017

Genet. Mol. Res.

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“…With the minimum repeat length of 12 base-pairs they are tandemly repeated usually 5-20 times in the genome (Goodfellow 1992;Vaughan and Lloyd 2003;Ellegren 2004;Prajapati et al 2017). As a result of their quickness, simplicity, rich polymorphism and stability SSR markers are highly popular in genetic diversity analysis (Turkoglu et al 2013;Gürcan et al 2015;Batnini et al 2016), construction of fingerprints (Cantini et al 2001;Rojas et al 2008;Klabunde et al 2014;Turet-Sayar et al 2012;Ivanovych et al 2017), genetic purity test (Spann et al 2010), molecular map construction and gene mapping (Ogundiwin et al 2009;Olukolu et al 2009;Fan et al 2010;Pacheco et al 2014;Rowland et al 2014;Wang et al 2014;Eduardo et al 2015), utilization of heterosis, especially in the identification of species that are genetically related. Microsatellite markers have also been used in several studies to define conserved regions among related species (Decroocq et al 2003;Martínez-Gómez et al 2003;Maghuly and Laimer 2011;Alisoltani et al 2016) for both plants and animals genome mapping (Weising et al1998).…”

Section: Introductionmentioning

confidence: 99%

Preliminary results of SSR based characterization of sour (Prunus cerasus L.) and sweet cherry (Prunus avium L.) genotypes cultivated in Hungary

Eren¹,

Bedő²,

Edosa³

et al. 2017

Columella

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Cherry cultivation in the Carpathian basin area began more than 100.000 years ago. Adapting to the basin specific ecological conditions resulted in high degree of genetic variability among the cherry cultivars. The SSR (Simple Sequence Repeat) markers allow the discrimination of the cultivars and determination their specific DNA fingerprints. Due to the high degree of polymorphism of microsatellite markers, generally only six SSR loci are enough to differentiate the varieties. Microsatellite markers are used not only for cultivar identification but also for the verification of synonyms and homonyms. Owing to their locus specificity and Mendelian codominant inheritance, parentage can be clearly identified, primary and secondary relationships between the cultivars can be discovered. The aim of this research was to characterize 29 sour cherry (Prunus cerasus L.), and 38 sweet cherry (Prunus avium L.) genotypes cultivated in Hungary to establish their DNA fingerprints in 6 SSR loci by allele numbers and sizes.

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Evaluation of Turkish apricot germplasm using SSR markers: Genetic diversity assessment and search for Plum pox virus resistance alleles

Cited by 23 publications

References 51 publications

Analysis of Self-Incompatibility and Genetic Diversity in Diploid and Hexaploid Plum Genotypes

Analysis of Self-Incompatibility and Genetic Diversity in Diploid and Hexaploid Plum Genotypes

Genetic relationships in a germplasm collection of Camellia japonica and Camellia oleifera using SSR analysis

Preliminary results of SSR based characterization of sour (Prunus cerasus L.) and sweet cherry (Prunus avium L.) genotypes cultivated in Hungary

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