Environmental pollution is an issue of particular concern, specifically when industrial waste products are not subjected to appropriate treatment. Among various industries in the agri-food sector, the brewing industry holds a significant position in this context, given that beer stands as the predominant choice of consumers. Brewery waste generates significant quantities of organic substances, along with ammonium nitrogen and phosphorus. Among the various methods for their treatment, adsorption has received substantial attention due to its cost-effectiveness and operational simplicity. The present study investigates the adsorption capacity of two materials, zeolite and palygorskite, for the removal of ammonium nitrogen and brewery waste, using columns and batches. Simultaneously, desorption and regeneration experiments were conducted, and the effect of pH on their effectiveness was also examined. To understand the adsorption mechanisms, isotherm and kinetic models have been estimated. The results of the experiments have demonstrated a marked adsorption efficiency of the adsorbent materials, surpassing 90%. In comparison, zeolite has exhibited a better adsorption capacity in the removal of ammonium nitrogen, while palygorskite has shown greater aptitude for phosphorus removal. The purpose of these experiments was to investigate the adsorption capacity of these two materials as a potential medium for brewery wastewater treatment (e.g., as part of adsorption filter, trickling filters, and constructed wetlands).