Document-level event factuality identification (DocEFI) is an important task in event knowledge acquisition, which aims to detect whether an event actually occurs or not from the perspective of the document. Unlike the sentence-level task, a document can have multiple sentences with different event factualities, leading to event factuality conflicts in DocEFI. Existing studies attempt to aggregate local event factuality by exploiting document structures, but they mostly consider textual components in the document separately, degrading complicated correlations therein. To address the above issues, this paper proposes a novel approach, namely UR-HAT, to improve DocEFI with uncertain relational hypergraph attention networks. Particularly, we reframe a document graph as a hypergraph, and establish beneficial n-ary correlations among textual nodes with relational hyperedges, which helps to globally consider local factuality features to resolve event factuality conflicts. To better discern the importance of event factuality features, we further represent textual nodes with uncertain Gaussian distributions, and propose novel uncertain relational hypergraph attention networks to refine textual nodes with the document hypergraph. In addition, we select factuality-related keywords as nodes to enrich event factuality features. Experimental results demonstrate the effectiveness of our proposed method, and outperforms previous methods on two widely used benchmark datasets.