2018
DOI: 10.1021/acs.est.8b04587
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Evidence for Cross Species Extrapolation of Mammalian-Based High-Throughput Screening Assay Results

Abstract: High-throughput screening (HTS) and computational technologies have emerged as important tools for chemical hazard identification. The US Environmental Protection Agency (EPA) launched the Toxicity ForeCaster (ToxCast) Program, which has screened thousands of chemicals in hundreds of mammalian-based HTS assays for biological activity. The data are being used to prioritize toxicity testing on those chemicals likely to lead to adverse effects. To use HTS assays in predicting hazard to both humans and wildlife, i… Show more

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Cited by 52 publications
(42 citation statements)
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“…An especially powerful attribute of SeqAPASS is the ability to effectively “mine” the extensive NCBI protein sequence database in an efficient manner, thereby providing comparative data for millions of protein sequences and thousands of species (LaLone et al 2016). Previously LaLone et al (2018) used SeqAPASS to evaluate structural conservation of 17βHSD1 and 17βHSD3 across all vertebrate classes. For those analyses human 17βHSD isoforms were used as the query sequences for the similarity assessments.…”
Section: Discussionmentioning
confidence: 99%
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“…An especially powerful attribute of SeqAPASS is the ability to effectively “mine” the extensive NCBI protein sequence database in an efficient manner, thereby providing comparative data for millions of protein sequences and thousands of species (LaLone et al 2016). Previously LaLone et al (2018) used SeqAPASS to evaluate structural conservation of 17βHSD1 and 17βHSD3 across all vertebrate classes. For those analyses human 17βHSD isoforms were used as the query sequences for the similarity assessments.…”
Section: Discussionmentioning
confidence: 99%
“…The publicly accessible SeqAPASS tool (Ver 3.0, Data Version 3) allows for cross‐species comparisons of protein sequence and structure to evaluate protein conservation (LaLone et al 2016, 2018). Four 17βHSDs (1, 3, 7, and 12A) previously characterized in zebrafish as able to catalyze the conversion of E1 to E2 (Mindnich and Adamski 2009) were used as query sequences in SeqAPASS.…”
Section: Methodsmentioning
confidence: 99%
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“…Although ER and AR homology provides some information about pathway conservation, data are needed to compare responses in estrogen and androgen biosynthesis between mammals, fish, birds, and amphibians. Recent work with SeqAPASS and ToxCast/Tox21 mammalian‐based HTP assays showed a high degree of conservation between human and vertebrate ARs, steroidogenesis enzymes, and thyroid receptors and enzymes for most vertebrate groups (LaLone et al 2018). However, enzymes involved in glucocorticoid synthesis in some classes, such as Aves (birds) and Chondrichthyes (cartilaginous fishes), differed from human, and a 17β‐hydroxy‐steroid dehydrogenase differed between Lepidosauria (reptilian group) and Chondrichthyes compared with human (LaLone et al 2018).…”
Section: Biological Read‐across For Eatsmentioning
confidence: 99%
“…Recent work with SeqAPASS and ToxCast/Tox21 mammalian‐based HTP assays showed a high degree of conservation between human and vertebrate ARs, steroidogenesis enzymes, and thyroid receptors and enzymes for most vertebrate groups (LaLone et al 2018). However, enzymes involved in glucocorticoid synthesis in some classes, such as Aves (birds) and Chondrichthyes (cartilaginous fishes), differed from human, and a 17β‐hydroxy‐steroid dehydrogenase differed between Lepidosauria (reptilian group) and Chondrichthyes compared with human (LaLone et al 2018). These results for protein homology can be used as a line of evidence for pathway homology, but several factors (as discussed in the section Considerations and Limitations for Applying Biological Read‐Across Approaches ) can influence susceptibility to a chemical.…”
Section: Biological Read‐across For Eatsmentioning
confidence: 99%