Background
Despite the importance of domesticated animals in the generation and transmission of antibiotic‐resistant
Staphylococcus aureus
, the role of wild animals, specifically rodents, in the ecology of
S. aureus
remains unclear. We recovered and genotyped
S. aureus
isolates from wild Norway rats (
Rattus norvegicus
) in Boston, Massachusetts to examine genetic relationships between common human and animal
S. aureus
isolates in a large US metropolitan area.
Methods
We collected and necropsied 63 rats from June 2016 to June 2017. Nasal, foot pad, fur, and fecal swabs were collected.
Staphylococcus aureus
was isolated using culture‐based methods and polymerase chain reaction confirmation.
S. aureus
isolates were
spa
typed, tested for antibiotic susceptibility, and whole genome sequenced. Assembled sequences were uploaded to the Comprehensive Antibiotic Resistance Database to identify antibiotic resistance elements. A phylogenetic tree was constructed using the neighbor‐joining method with the maximum composite likelihood distance in MEGA7.
Results
We recovered 164 Gram‐positive bacterial isolates from Norway rats. Nineteen isolates from eight individual rats were confirmed as
S. aureus
(prevalence: 12.9% (8/63)). All
S. aureus
isolates were methicillin‐susceptible
S. aureus
(MSSA),
pvl
‐negative, and resistant to penicillin. Two isolates displayed resistance to erythromycin. Four different
S. aureus spa
types were detected (t933, t10751, t18202, and t189). Thirteen unique antibiotic resistance elements were identified, and all isolates shared genes
mepR
,
mgrA
,
arlR
, and
S. aureus norA
. Phylogenetic analysis if the 19
S. aureus
isolates revealed they were genetically similar to four clades of
S. aureus
with similar resistance gene profiles isolated from both human‐ and animal‐derived
S. aureus
, as well as formed a distinct phylogenetic cluster composed only of rat isolates.
Conclusions
Wild rodents may serve as a reservoir or vector of antibiotic resistance genes in the urban environment with relevance for human and animal health.