To identify carbon sources that trigger b-N-acetylglucosaminidase (NAGase) formation in Hypocrea atroviridis (anamorph Trichoderma atroviride), a screening system was designed that consists of a combination of Biolog Phenotype MicroArray plates, which contain 95 different carbon sources, and specific enzyme activity measurements using a chromogenic substrate. The results revealed growth-dependent kinetics of NAGase formation and it was shown that NAGase activities were enhanced on carbon sources sharing certain structural properties, especially on a-glucans (e.g. glycogen, dextrin and maltotriose) and oligosaccharides containing galactose. Enzyme activities were assessed in the wild-type and a H. atroviridis Dnag1 strain to investigate the influence of the two NAGases, Nag1 and Nag2, on total NAGase activity. Reduction of NAGase levels in the Dnag1 strain in comparison to the wild-type was strongly carbon-source and growth-phase dependent, indicating the distinct physiological roles of the two proteins. The transcript abundance of nag1 and nag2 was increased on carbon sources with elevated NAGase activity, indicating transcriptional regulation of these genes. The screening method for the identification of carbon sources that induce enzymes or a gene of interest, as presented in this paper, can be adapted for other purposes if appropriate enzyme or reporter assays are available.
INTRODUCTIONSome species of the soil fungus Hypocrea (anamorph Trichoderma), e.g. Hypocrea atroviridis (Trichoderma atroviride) (Dodd et al., 2003), Hypocrea lixii (Trichoderma harzianum), Hypocrea virens (Trichoderma virens) and Trichoderma asperellum, are potent mycoparasites against several plant-pathogenic fungi, and lysis of the host cell wall has been demonstrated to be an important step in the mycoparasitic attack (Benítez et al., 2004;Chet et al., 1998;Howell, 2003;Kubicek et al., 2001). Consequently, with chitin being a major cell wall component of plant pathogens like Rhizoctonia solani, Botrytis cinerea and Sclerotinia sclerotiorum, several chitinolytic genes, encoding chitinases (EC 3.2.1.14) and b-N-acetylglucosaminidases (NAGases; EC 3.2.1.52), have been cloned from Hypocrea/Trichoderma spp. (Carsolio et al., 1994;Draborg et al., 1995;Garcia et al., 1994;Hayes et al., 1994;Kim et al., 2002;Peterbauer et al., 1996;Seidl et al., 2005;Viterbo et al., 2001Viterbo et al., , 2002 and for some of them the encoded protein also has been characterized (Boer et al., 2004;de la Cruz et al., 1992;Hoell et al., 2005). The regulation of expression of NAGases and chitinases in Hypocrea/Trichoderma has so far, besides Trichoderma-host interaction assays, only been studied with respect to their upregulation during growth on colloidal chitin, chitin degradation products and fungal cell walls (Carsolio et al., 1994; de las Mercedes Dana et al., 2001;Kim et al., 2002;Mach et al., 1999;Ramot et al., 2004). Additionally, the influence of carbon and nitrogen starvation on the expression of chitinolytic genes has been investigated (de las Mercedes D...