Recently, advanced biomaterial-based wound dressing due to bioactive properties have been considered and it has shown promising results. In this research, we prepared and improved an antibacterial silk fibroin/gelatin (SF/Gel) bilayer sponge scaffold loaded with various concentrations of a cationic antimicrobial peptide (CM11 peptide) as wound dressing for skin and soft tissue infections. The fabricated AMP-loaded SF/Gel sponge was completely designed and compared to the neat SF/Gel sponge in vitro. Then, the release behavior of various concentrations of peptide (8, 16, and 32 µg/ml) from the peptide-loaded SF/Gel sponge was analyzed. Eventually, according to cytotoxic activity, the antibacterial effect of scaffolds containing 8 and 16 µg/ml of the peptide was assessed against standard and multi-drug resistant strains of Staphylococcus aureus, Escherichia coli, and Pseudomonas aeruginosa isolated from burn patients. The SF/Gel sponge loaded with peptide exhibited suitable mechanical attributes, high water uptake, optimum biodegradation rate, and a controlled release without cytotoxicity on Hu02 human foreskin fibroblast cells at the 8 and 16 µg/ml concentrations of peptide. The SF/Gel sponge including 16 µg/ml peptide represented a significant antibacterial effect against all strains. The results indicated that the antimicrobial modified sponge could be considered as a candidate to apply as a wound dressing.