Abstract. Bovine coronavirus (BCV) is 1 of the major causes of calf diarrhea and has also been implicated in respiratory infections of young calves and winter dysentery of adult cattle. Currently, transmission electron microscopy (TEM), direct fluorescent antibody (DFA), and enzyme-linked immunosorbent assay (ELISA) techniques are considered standard methods for the diagnosis of BCV infection. However, these techniques are not useful if fresh tissues and intestinal contents are not available for examination. The detection of viral antigens in formalin-fixed, paraffin-embedded tissues using immunohistochemistry (IHC) is a suitable alternative. In the present study, 166 tissue specimens were tested by IHC for the presence of BCV. These tissues were from animals whose feces were positive for rotavirus and/or coronavirus by TEM. Some of these samples were also tested by DFA. Thus, TEM, DFA, and IHC were compared for the detection of BCV. There was 56% agreement among the 3 methods (overall kappa ϭ 0.368). When IHC was compared with TEM, 78% agreement was observed (kappa ϭ 0.475). Similarly, IHC and DFA had 64% agreement (kappa ϭ 0.277). These kappa values indicate a moderate degree of agreement between IHC and TEM; agreement between IHC and DFA was fair. The results of this study indicate that IHC may be a suitable adjunct for the detection of BCV because of its simplicity, ease of use, and relatively close correlation with TEM results.Calf scours is a major cause of economic losses to the cattle industry resulting in annual losses of up to $1.7 billion around the world, 28 increasing in recent years due to the adoption of intensive beef and dairy practices. 30 Bovine coronavirus (BCV) is one of the leading causes of calf scours, 32 with coronaviruses and rotaviruses estimated to account for 20-26% and 27-36% of all cases of calf diarrhea, respectively. 3 More severe diarrhea and higher mortality is caused by BCV than by rotaviruses because it involves both the large and the small intestines. 38 BCV has also been implicated in winter dysentery of adult cattle 31 and in respiratory tract infection of 2-16-week-old calves. 20 BCV has also been implicated in pneumonia in adult dairy cattle 9 and in cattle after shipping. 35 BCV can be detected by transmission electron microscopic examination of fecal samples, direct fluorescent antibody assay (DFA) on frozen sections of spiral colon, 23 and enzyme-linked immunosorbent assay (ELISA) 10 and occasionally through virus isolation in vitro. 21 Currently, transmission electron microscopy (TEM) and DFA are the most widely used methods for BCV diagnosis. 27 Results from TEM can be obtained in a few hours, but the technique has the limi- tation of detecting nonviral particles that may look like coronavirus and detecting virus only when the number of virions is Ͼ10 6 /g of feces. 12 After the onset of diarrhea, the amount of BCV in feces may fall rapidly below the detection limits of TEM. 20 Another difficulty is that a relatively small number of samples can be examined by TEM in...