The light reactions of photosynthesis, which include lightharvesting and charge separation, take place in the amphiphilic environment of the thylakoid membrane. The light-harvesting complex II (LHCII) is the main responsible for light absorption in plants and green algae and is involved in photoprotective mechanisms that regulate the amount of excited states in the membrane. The dual function of LHCII has been extensively studied in detergent micelles, but recent results have indicated that the properties of this complex differ in a lipid environment. In this work we checked these suggestions by studying LHCII in liposomes. By combining bulk and single molecule measurements, we monitored the fluorescence characteristics of liposomes containing single complexes up to densely packed proteoliposomes. We show that the natural lipid environment per se does not alter the properties of LHCII, which for single complexes remain very similar to that in detergent. However, we show that LHCII has the strong tendency to cluster in the membrane and that protein interactions and the extent of crowding modulate the lifetimes of the excited state in the membrane. Finally, the presence of LHCII monomers at low concentrations of complexes per liposome is discussed.Photosynthetic organisms evolved the capacity to harvest the energy of solar radiation and store it into chemical compounds. In vascular plants and green algae, sunlight is absorbed by a series of membrane proteins called light-harvesting complexes (LHC).3 The most abundant of these pigment-protein complexes is LHCII. The LHCs have a dual function; in low light conditions they absorb solar energy and efficiently transfer the excitation energy to the reaction center, and in high light they additionally play a role in photoprotection by dissipating the energy absorbed in excess as heat (1, 2). This last process called non-photochemical quenching (NPQ) leads to a decrease of the excited state lifetime of chlorophyll a (Chl a), limiting the possibility of Chl triplet formation and thus the production of singlet oxygen (3). The fast, on the timescale of seconds, and fully reversible part of NPQ is called qE. This mechanism is triggered by the acidification of the lumenal space of the thylakoids, which activates PsbS (4) and LhcSR (5), the proteins responsible for NPQ in plants and green algae, respectively, and the violaxanthin de-epoxidase, which converts violaxanthin into zeaxanthin (for reviews, see Refs. 6 and 7). Although the precise molecular mechanism of quenching has not been fully elucidated yet, a prominent idea discussed in literature is that NPQ is regulated via conformational changes of LHCII. Those changes could be correlated to, or even caused by, LHCII aggregation (8, 9). It was observed that low pH and zeaxanthin, both occurring in high light, enhance LHCII aggregation (10). Aggregation of LHCII in vitro is accompanied by a decrease of the Chl a fluorescence yield, indicating an increased rate of energy dissipation (9, 11). The generation of new quenching sit...