Under the terms of the manifestations of characteristics emergent economy in Ukraine, is gradually strengthening its influence on the functioning of the industrial enterprises, which require significant concentration of efforts on innovation development. The modern state of functioning of industrial enterprises in the world economy is characterized by the presence of a significant number of global value chains, which form a cluster of associations, corporations, conglomerates, holding companies, consortia, increasing the dependence of national economies on imported raw and materials. So, actualized need to develop conceptual scheme of economic diagnostics, which is focused on determining the effect of the introduction of innovative business processes and manage the development of integrated value chains for the purpose of clustering of industrial enterprises. In article is submitted the new conceptual scheme of estimation of innovative business processes of the industrial enterprises in conditions emergence economies which unlike existing defines the sequence of estimation of impact of innovative business processes on management of their development, and provides a combination of integrated estimation the level of introduction of innovative business processes, economic-mathematical modeling of influence of production factors on profitability of the enterprise for the purpose of definition like its economic growth and for the further choice of strategy of response to corresponding changes in emergence to economy.