The coprophagic behavior of rodents has been used in a model examining the potential health effects of environmentally released microorganisms. Mutant polychlorinated biphenyl (PCB) degrading pseudomonads, isolated from a commercial product for PCB elimination, were used to evaluate the method. The PCB‐degrading component of the product was composed of one Pseudomonas maltophilia and three Pseudomonas aeruginosa strains enhanced for PCB degradation through nitrosoguanidine mutagenesis. Multiple ingestions of the biodegraders were compared with a single exposure. The direct health effects monitored were changes in weight, appetite and overall appearance. The indirect health effects monitored included recovery of the organisms from intestinal contents as well as competition with and alteration of the normal intestinal flora. When animals received a single dose by gavage of 109 colony forming units of an individual Pseudomonas sp., none of the four dosed strains were detected 14 d after dosing when animals were housed in metabolism cages. The use of these metabolism cages, which had wire flooring, limited coprophagy. When animals were housed in conventional cages, which allowed coprophagy, two of the four PCB degraders tested were recovered (104/g intestine). The lactose‐fermenting and total aerobic counts were unaffected when animals received a single dose of the biodegrader. In the multiple exposure model, P. maltophilia altered the lactose‐fermenting population. The total aerobic counts differed significantly from values for control animals when the animals were exposed to P. aeruginosa strains BC16, BC17 and BC18. Obligately anaerobic gram‐negative rod populations were affected in P. aeruginosa strain BC17‐dosed animals. Strains BC16 and BC18 altered both the obligately anaerobic rod populations and total anaerobic counts.