In this study, we determined the genetic diversity of Mycobacterium tuberculosis isolated in Norway from 1999 to 2001. The results were compared to those for strains isolated from 1994 to 1998. A total of 818 patients were diagnosed with tuberculosis (TB) during the last 3-year period. Of these cases, 576 (70%) were verified by culturing, and strains from 551 patients (96%) were analyzed by the IS6110 restriction fragment length polymorphism (RFLP) method. We excluded 13 strains (2.4%) from the analyses, since they were found to represent false-positive samples. A total of 67 strains (12%) that carried fewer than five copies of IS6110 were analyzed by spoligotyping. The strains were from 157 patients (29%) of Norwegian origin and 381 patients (71%) of foreign origin. The rate of diversity among all of the strains was 90%, while in 1994 to 1998 it was 87%. Clusters were assumed to have arisen from recent transmission; the degree of such transmission was 10% in 1999 to 2001, while for the whole 8-year period (1994 to 2001), it was 11%. Of the 109 patients diagnosed as being part of a cluster in 1999 to 2001, 89 were infected with a strain that carried more than four copies of IS6110. Among these 89 patients, 52 (58%) were infected with a strain that had already been identified in 1994 to 1998. The results indicated that most cases of TB in Norway were due to the import of new strains rather than to transmission within the country. This finding demonstrates that screening of immigrants for TB upon arrival in Norway needs to be improved. Outbreaks, however, were caused mainly by strains that have been circulating in Norway for many years.Globally, the number of tuberculosis (TB) cases is currently increasing at 2% per year (8). Programs to keep TB from rising in low-incidence countries are challenged by international traveling and immigration from high-burden countries (2-5, 14, 15, 18, 22). In Norway, patients with a foreign background contribute substantially to the TB incidence (4, 5, 11).In recent years, DNA fingerprinting of Mycobacterium tuberculosis based on restriction fragment length polymorphism (RFLP) analysis with IS6110 as a probe has given new insight into the nature of TB transmission. It has also become an indispensable tool for quality assurance of the processing and culturing of patient samples (1, 4, 5, 7, 9, 13-16, 18, 21, 22). Since 1994, IS6110 RFLP analysis has been performed on basically all strains of M. tuberculosis isolated in Norway (4, 5). However, isolates of M. tuberculosis that possess few copies of IS6110 do not generate sufficient polymorphisms to be readily distinguished by this technique. Another method, spoligotyping, involves the simultaneous detection of the presence or absence of 43 DNA spacer sequences and is superior to IS6110 RFLP analysis in discriminating isolates with fewer than five IS6110 copies (12,13,20). Spoligotyping is therefore generally used to analyze strains with fewer than five copies of IS6110 (12,13,18,20) and has been performed on such strains isolated in...