The discs large (Dlg) protein, or synapse-associated protein 97 (SAP97), is a member of the membraneassociated guanylate kinase family of multidomain scaffolding proteins which recruits transmembrane and signaling molecules to localized plasma membrane sites. Murine dlg is the homologue of the Drosophila dlg tumor suppressor gene. The loss of dlg function in Drosophila disrupts cellular growth control, apicobasal polarity, and cell adhesion of imaginal disc epithelial cells, resulting in embryonic lethality. In this study, we isolated a mutational insertion in the murine dlg locus by gene trapping in totipotent embryonic stem cells. This insertion results in a truncated protein product that contains the N-terminal three PSD-95/DLG/ZO-1 domains of Dlg fused to the LacZ reporter and subsequently lacks the src homology 3 (SH3), protein 4.1 binding, and guanylate kinase (GUK)-like domains. The Dlg-LacZ fusion protein is expressed in epithelial, mesenchymal, neuronal, endothelial, and hematopoietic cells during embryogenesis. Mice homozygous for the dlg mutation exhibit growth retardation in utero, have hypoplasia of the premaxilla and mandible, have a cleft secondary palate, and die perinatally. Consistent with this phenotype, Dlg-LacZ is expressed in mesenchymal and epithelial cells throughout palatal development. Our genetic and phenotypic analysis of dlg mutant mice suggests that protein-protein interactions involving the SH3, protein 4.1 binding, and/or GUK-like domains are essential to the normal function of murine Dlg within craniofacial and palatal morphogenesis.The product of the murine discs large (dlg) gene (25) belongs to the family of membrane-associated guanylate kinase (MAGUK) scaffolding proteins (3, 5). The first member of the MAGUK family was identified in Drosophila as recessive lethal mutations in dlg associated with neoplastic overgrowth of imaginal disc epithelial cells. In addition to loss of cellular growth control, epithelial cells in dlg mutants also demonstrated abnormalities in septate junction formation, cell polarity, and cell adhesion (40,45,46). Two recent reports have also presented evidence that mammalian Dlg is involved in regulation of cell growth (17, 41), raising the possibility that mammalian Dlg is involved in oncogenesis, consistent with the loss of cellular growth control in loss-of-function Drosophila dlg mutants.Members of the MAGUK family (the Dlg-like, p55-like, lin2-like, and ZO-1-like proteins) (5) have a protein domain structure in common that includes one to three PDZ (PSD-95/DLG/ZO-1) domains, a src homology 3 (SH3) domain, and a guanylate kinase (GUK)-like domain (Fig. 1A). These domains mediate interactions with a variety of transmembrane, ion channel, signaling, and cytoskeletal proteins, thereby localizing these protein complexes to specialized membrane sites, such as regions of cell-cell contact in epithelial cells, the plasma membrane of red blood cells, and synaptic junctions (5). The PDZ domains of human Dlg (hDlg) and the rat homologue, synapse-associated pr...