Farmyard manure (FYM)mixtures of animal droppings, crop residues, and fodder that are piled nearby homesteadsis a major nutrient source for smallholder farmers in Sub-Saharan Africa. However, its application effect has not been fully understood on typical P-deficient soils in tropics and in particular under anaerobic conditions. This study assessed the effect of FYM on irrigated rice in relation to soil propertiesoxalate-extractable P (P Ox), pH, and total C (TotC)that are important indicators of soil P deficiency in the region. The first pot experiment was conducted with a factorial combination of FYM (0 and 20 g kg-1) and mineral P (0 and 100 mg kg-1) applications using six paddy soils differing in the aforementioned soil properties. The second pot experiment was conducted in a factorial combination of FYM and mineral P using the isotope dilution technique. In both experiments, the effect of FYM application on biomass and P uptake of rice per P applied was nearly equivalent to that of mineral P and was greater in soils with lower TotC and lower pH with negligible effect of P Ox. The isotope tracing suggested that the FYM application might increase rice P uptake by solubilizing non-labile P pools in soils while mineral P was directly used by rice from labile P pools. The results indicated that the FYM should be most effective in soils with low TotC and low pH, and its application could enable the use of insoluble P pools in soils and enhance P uptake of rice under P-deficient and anaerobic conditions.