Non-Hermitian dissipation dynamics, capable of turning the conventionally detrimental decoherence effects to useful resources for state engineering, is highly attractive to quantum information processing. In this work, an effective scheme is developed for implementing fast population transfer with a superconducting qutrit via the non-Hermitian shortcut to adiabaticity (STA). We first deal with a Λ-configuration interaction between the qutrit and microwave drivings, in which the dephasing-assisted qubit state inversion requiring an overlarge dephasing rate is constructed non-adiabatically. After introducing a feasible ancillary driving that directly acts upon the qubit states, the target state transfer can be well realized but with an accessible qubit dephasing rate. Moreover, a high fidelity could be numerically obtained in the considered system. The strategy could provide a new route towards the non-Hermitian shortcut operations on superconducting quantum circuits.