“…Images of Picrosirius Red-stained slides were captured at 40 × and then color deconvoluted, converted to gray scale, binarized, and skeletonized using a novel algorithm run in MATLAB with Image Processing Toolbox (R2018b, MathWorks, Natick, MA) 41 . From the skeletonized images, 13 parameters of red collagen fibers were extracted (brightness, number, length, width, persistence, angle, branchpoints, euler number, extent, perimeter, solidity, eccentricity, equivalent diameter), measured using the regionprops command 42 , and underwent dimensionality reduction to generate 2 dimensional t-Distributed Stochastic Neighbor Embedding (TSNE) plots to visualize collective differences in the collagen fiber network patterns between groups. Geometric shapes were drawn to approximate the distribution of each cluster.…”