Small hcrbivorous animals living on coarse food during cold or dry periods require a mechanism to be able to eat large quantities of food without losing the micro-organisms they need for fermentation. They use colonic separation mechanisms (CSM) that allow rapid transport of the less digestible food particles through the digestive tract whilst at the same time they retain micro-organisms and easily digestible food particles in their caecum for sufficiently long time periods in order for fermentation and microbial reproduction to take place. As a result of CSM, micro-organisms accumulate in the caecum. All species provided with a CSM utilise microbial proteins and vitamins via caecotrophy. A comparison is made between species belonging to the order Lagomorpha (hare, rabbit, pika) and species belonging to two suborders of Rodentia [myomorph rodents (rat, lemming, vole) and caviomorph rodents (guinea pig, chinchilla, nutria)].The effects of the CSM are similar amongst the species studied, however, the efficiency of the CSM differs between individual species independent of the orderisuborders to which they belong. The anatomy of the caecum and proximal colon is similar within the lagomorph order, but different compared to the rodents. It is more or less similar within each of the rodent suborders but differs between suborders. The mode of trapping and returning micro-organism is similar in myomorph and caviomorph rodents but different compared to the lagomorph species. Outside of the lagomorph and rodent orders CSM producing similar effects are found only in a few marsupial species. The anatomical and physiological background of the CSM in these species is not known.