Endogenous c-Kit cardiac progenitor cells (eCPCs) and bone marrow (BM)-derived mesenchymal stem cells (MSCs) are being developed for cardiac regenerative therapy, but a better understanding of their physiology is needed. Here, we addressed the unknown functional role of ion channels in freshly isolated eCPCs and expanded BM-MSCs using patch-clamp, microfluorometry and confocal microscopy. Isolated c-Kit eCPCs were purified from dog hearts by immunomagnetic selection. Ion currents were barely detectable in freshly isolated c-Kit eCPCs with buffering of intracellular calcium (Ca ). Under conditions allowing free intracellular Ca , freshly isolated c-Kit eCPCs and ex vivo proliferated BM-MSCs showed prominent voltage-independent conductances that were sensitive to intermediate-conductance K -channel (KCa3.1 current, I ) blockers and corresponding gene (KCNN4)-expression knockdown. Depletion of Ca induced membrane-potential (V ) depolarization, while store-operated Ca entry (SOCE) hyperpolarized V in both cell types. The hyperpolarizing SOCE effect was substantially reduced by I or SOCE blockade (TRAM-34, 2-APB), and I blockade (TRAM-34) or KCNN4-knockdown decreased the Ca entry resulting from SOCE. I suppression reduced c-Kit eCPC and BM-MSC proliferation, while significantly altering the profile of cyclin expression. I was reduced in c-Kit eCPCs isolated from dogs with congestive heart failure (CHF), along with corresponding KCNN4 mRNA. Under perforated-patch conditions to maintain physiological [Ca ] , c-Kit eCPCs from CHF dogs had less negative resting membrane potentials (-58 ± 7 mV) versus c-Kit eCPCs from control dogs (-73 ± 3 mV, P < 0.05), along with slower proliferation. Our study suggests that Ca -induced increases in I are necessary to optimize membrane potential during the Ca entry that activates progenitor cell proliferation, and that alterations in KCa3.1 may have pathophysiological and therapeutic significance in regenerative medicine.