Objective:The aim of this study was to systematically review the evidence across studies that assessed DNA methylome variations in association with food allergy (FA).Design: A systematic review of the literature and meta-analysis were carried out within several databases. However, the risk of bias in the included articles was not evaluated.Data sources: PubMed, Cochrane Database of Systematic Reviews, and Web of Science were used to search up to July 2022.
Eligibility criteria:We included targeted and epigenome-wide association studies (EWASs) that assessed DNA methylome alterations in association with FA in adult or paediatric populations.Results: Among 366 publications, only 16 were retained, which were mainly focused on FA in children. Seven candidate gene-targeted studies found associations in Th1/ Th2 imbalance (IL4, IL5, IL10, INFG, IL2 and IL12B genes), regulatory T cell function (FOXP3 gene), Toll-like receptors pathway (TLR2, CD14 genes) and digestive barrier integrity (FLG gene). Nine EWAS assessed the association with peanut allergy (n = 3), cow's milk allergy (n = 2) or various food allergens (n = 4). They highlighted 11 differentially methylated loci in at least two studies (RPS6KA2, CAMTA1, CTBP2, RYR2, TRAPPC9, DOCK1, GALNTL4, HDAC4, UMODL1, ZAK and TNS3 genes). Among them, Food allergy (FA) is a current public health issue with an increasing incidence over time, suggesting potential epigenetic triggers. Nearly 8% of children have FA in the United States. 1 Food allergy can produce high alteration of the quality of life. In some cases, it may have a severe presentation with life-threatening complications, including fatal episodes of anaphylaxis. 2 There are more than 170 foods that have been reported to cause FA; among them, eight common foods (i.e., cow's milk, hen's egg, peanut, tree nuts, wheat, soy, fish and crustacean shellfish) are responsible for 90% of the reported FA CAMTA1 and RPS6KA2, and CTBP2 are involved in regulatory T cell function and Th2 cell differentiation, respectively. Gene-functional analysis revealed two enriched gene clusters involved in immune responses and protein phosphorylation. ChIP-X Enrichment Analysis 3 showed eight significant transcription factors (RXRA, ZBTB7A, ESR1, TCF3, MYOD1, CTCF, GATA3 and CBX2). Ingenuity Pathway Analysis identified canonical pathways involved, among other, in B cell development, pathogen-induced cytokine storm signalling pathway and dendritic cell maturation.
Conclusion:This review highlights the involvement of epigenomic alterations of loci in Th1/Th2 and regulatory T cell differentiation in both candidate gene studies and EWAS. These alterations provide a better insight into the mechanistic aspects in FA pathogenesis and may guide the development of epigenome-based biomarkers for FA.