Micro-patches are the basic unit of grazing ecosystems; the characteristics of these micro-patches are relatively stable in species under different grazing intensities in the same vegetation, but obviously different in terms of the distribution pattern. This leads to differentiation of plant community numerical characteristics under different grazing intensities. Understanding the driving force of soil nutrient variation in micro-patches under grazing disturbances will help us comprehend the regulation strategy and adaptation mechanisms of the ecosystem against over-disturbance. We designed four scales: spatial (three typical micro-patches), temporal serial (6 years), a degradation succession process (four key degradation stages), and recovery treatment (three treatments: the original grazing intensity based on herder preferences, half of the original grazing intensity, and zero grazing). The soil nutrient characteristics used to estimate stabilization were the typical soil total nutrient content (soil organic matter [SOM], total nitrogen [TN], total carbon [TC], inorganic carbon [IC], total phosphorus [STP], total potassium [TK], and pH), and available soil nutrients (NH4+, NO3−, phosphorous [avP], and potassium [avK]). Variations in the SOM, TC, IC, TN, STP, avK, and NO3− levels in the main root distribution layers (0–20 cm) on the spatial scale were 69.8–79.7%, 61.4–80.35%, 49.8–79.58%, 60.52–76.34%, 46.44–89.89%, 45.5–71.36%, and 59.21–65.38%, respectively, which accounted for the largest variation in the four scales, based on multivariable analysis. The variations in the avP and NH4+ content of the main root distribution layers (0–20 cm) at the temporal scale were 46.42–67.93% and 48.11–64.55%, respectively, which accounted for the greatest variation in the four scales, based on a multivariable analysis. Upon comparing the degradation succession stages and recovery treatment in each stage, we found that the variation in avP, avK, STP, TN, TC, SOM, TC, and TN content was greater at the degradation succession scale than at the recovery treatment scale. The soil nutrient content of the micro-patches exhibited the smallest decrease in the Gramineae–Kobresia transformation (G–KP) micro-patch, followed by the Gramineae micro-patches (G) and Kobresia micro-patches (KP). The number of G micro-patches decreased with increasing grazing intensity whereas the number of KP micro-patches increased. When the number of KP micro-patches increased to a certain degree, the number of G–KP micro-patches then increased as well. G–KP micro-patches, characterized by cracking in the mattic epipedon in alpine meadows, increased with the grazing intensity increasing in a certain degree in K. pygmaea meadows with mattic epipedon cracking (CP); the latter buffered the nutrient variation and maintained the soil nutrients’ relative stability in the ecosystem. Thus, CP formed the buffer stage for maintaining self-stabilization during a regime shift and was considered the withstanding stage under conditions of decreased or prohibited livestock grazing during the alpine Kobresia meadow degradation process.