“…Within our implementation of the open-source framework ( Figure 2A ), the Python-based open-source software packages used were ITK-SNAP ( http://www.itksnap.org /, version 3.6.0, GNU-GPL) ( Yushkevich et al, 2006 ) for segmentation, Salome ( https://www.salome-platform.org/ , version 8.5.0, GNU-LGPL) ( Ribes and Caremoli, 2007 ) for designing and meshing, Gmsh ( http://gmsh.info/ , version 4.4.1, GNU-GPL) ( Geuzaine and Remacle, 2009 ) and command-line tool dolfin-convert (GNU-LGPL) for pre-processing, the finite element software FEniCS for solving and post-processing, and Paraview ( https://www.paraview.org/ , version 5.0.1, 3-Clause BSD License) ( Ahrens et al, 2005 ) for visualizing the simulation results. More details of the steps followed to set up the finite element model are published in ( Bansod et al, 2021 ; Bansod and van Rienen, 2019 ). Figure 2B outlines the implemented bone remodeling algorithm, where the material properties were updated in each iteration through the positive feedback loop.…”