First occurrence of Sugarcane streak mosaic virus infecting sugarcane in Indonesia

Damayanti, Tri Asmira; Putra, Lilik Koesmihartono

doi:10.1007/s10327-010-0285-7

Cited by 38 publications

(27 citation statements)

References 8 publications

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…To date, SCSMV has a broad host range and has been found from sugarcane in India, Pakistan, USA, China, Thailand, Sri Lanka, Vietnam, and Indonesia (Hall et al, 1998;Chatenet et al, 2005;Damayanti and Putra, 2011;Li et al, 2011), from sorghum in India (Srinivas et al, 2010) and weeds in Indonesia (Prabowo et al, 2014). Seven full length genomic sequences of SCSMV isolates from Pakistan, Thailand, India, and China have been published (Xu et al, 2010;Li et al, 2011;Parameswari et al, 2013).…”

Section: Introductionmentioning

confidence: 97%

Genetic structure of populations of sugarcane streak mosaic virus in China: Comparison with the populations in India

Yasaka

et al. 2016

Virus Research

View full text Add to dashboard Cite

Section: Introductionmentioning

confidence: 97%

Genetic structure of populations of sugarcane streak mosaic virus in China: Comparison with the populations in India

Yasaka

et al. 2016

Virus Research

View full text Add to dashboard Cite

“…However, in India and several other Asian countries, members of the species Sugarcane streak mosaic virus (SCSMV), genus Poacevirus, family Potyviridae, are also found to be a major cause of mosaic disease [1][2][3][4]. In sugarcane-growing states of India, SCSMV is more prevalent than SCMV [5,6].…”

mentioning

confidence: 99%

Genetic variability and potential recombination events in the HC-Pro gene of sugarcane streak mosaic virus

et al. 2012

View full text Add to dashboard Cite

Sugarcane streak mosaic virus (SCSMV), a member of the family Potyviridae, is an important viral pathogen affecting sugarcane production in India. The variability in the nucleotide (nt) and amino acid (aa) sequences of helper component proteinase (HC-Pro) of SCSMV isolates from India was investigated and compared with those of previously published virus isolates from different Asian countries. Comparison of all of the sequenced virus isolates revealed a high level of diversity in the HC-Pro gene (72-97% nt sequence identity; 83-99% aa sequence identity), and the Indian isolates were found to be the most divergent (up to 12% variation at the amino acid level). Phylogenetic analysis revealed clustering of 16 SCSMV isolates into two groups. Group I included isolates from India and Pakistan, and group II consisted of isolates from Japan and Indonesia. Recombination analysis revealed nine potentially significant recombination events, and putative recombination sites were identified throughout the HC-Pro gene. Analysis of selection pressure indicated that the HC-Pro gene of SCSMV is under strong negative selection. It is likely that recombination, along with strong negative selection, enhances the speed of elimination of deleterious mutations in the HC-Pro gene.

show abstract

“…The highly incidence of the CarMV might be facilitated by mechanical transmission via cutter such as knives or scissors during preparation of plant materials before planting or during harvesting. SCSMV was also reported rapidly distributed in Java, Indonesia facilitated with similar manner (Damayanti and Putra, 2011). CarMV can be easily transmitted by sap of diseased plants, cuttings scissors or contact between plants (Safari et al, 2009).…”

Section: Electron Microscopymentioning

confidence: 91%

IDENTIFICATION AND CHARACTERIZATION OF CARMOVIRUS ON CARNATION (Dianthus caryophyllus L.) IN WEST JAVA, INDONESIA

Diningsih¹,

Suastika

Damayanti

et al. 2015

Agrivita.J.Agr.Sci

Self Cite

View full text Add to dashboard Cite

Carnation has a highly economic demand of cut flower in Indonesia. Field observations in West Java Indonesia was conducted in order to find the typical mottle symptoms that was a suspect caused by a virus disease. Identification of the virus was respectively conducted by performing ELISA test with four anti sera and characterizations held by bioassay, observing of virion particles, detecting of nucleic acid by RT-PCR and nucleotide sequencing. Total of 403 samples were collected from plants with or no virus-like symptoms. Among those all tested, 83% were found to be infected by Carnation mottle virus (CarMV), but negatively against Carnation ringspot virus (CRSV), Carnation laten virus (CLV), and Carnation vein mottle virus (CVMV) antisera. By mechanical inoculation, the virus was able to infect systemically Cenopodium quinoa and locally infect on others. However on Phalaenopsis sp and Gomprena globosa, there was symptompless found. The isometric CarMV particles size was approximately 30 nm. RT-PCR using specific primers of CP gene of CarMV successfully amplified a DNA sized 1000 bp. CarMV West Java Indonesian (Idn-WJ) isolates possessed the highest nucleotide and amino acid homology with CarMV from Spain and was in the same cluster with CarMV from China, Taiwan and Israel.

show abstract

First occurrence of Sugarcane streak mosaic virus infecting sugarcane in Indonesia

Cited by 38 publications

References 8 publications

Genetic structure of populations of sugarcane streak mosaic virus in China: Comparison with the populations in India

Genetic structure of populations of sugarcane streak mosaic virus in China: Comparison with the populations in India

Genetic variability and potential recombination events in the HC-Pro gene of sugarcane streak mosaic virus

IDENTIFICATION AND CHARACTERIZATION OF CARMOVIRUS ON CARNATION (Dianthus caryophyllus L.) IN WEST JAVA, INDONESIA

Contact Info

Product

Resources

About