The Tobamovirus, Tomato mottle mosaic virus (ToMMV), was first reported in Mexico in 2013. The virus is thought to pose a serious risk to capsicum (Capsicum annuum) and tomato (Solanum lycopersicum) crops as it is may break resistance. In May 2019 a shipment of imported capsicum seeds was submitted for testing on-shore and using a one-step RT-PCR which detects Solanaceous tobamoviruses, an amplicon of 811 base pairs (bp) was detected and direct sequencing of this amplicon indicated that it had 98% -99% nucleotide (nt) identity to the same region in ToMMV isolates. A cDNA library was generated using the Illumina TruSeq Stranded Total RNA and sequenced using Illumina HiSeq 3000 technology, bioinformatic analysis confirmed the arrangement of a 6398 nt genome which was 98% -99% nt identity with the type strain of ToMMV. This is the first report of ToMMV in Capsicum annuum seed.