Flagella in procaryotes are complex structures requiring the coordinate expression of over 50 genes, including flagellin, the major repeating structural protein. We have previously shown that a functional RpoN gene product is required for expression of flagellin in Pseudomonas aeruginosa PAK (P. A. Totten and S. Lory, J. Bacteriol. 172:389-396, 1990) and have now cloned, sequenced, and determined the transcriptional start site of the structural gene for this flagellin. The clones containing this gene produced a protein that reacted on Western immunoblots with polyclonal and four different monoclonal antibodies to purified flagella. However, this flagellin protein in Escherichia coli was slightly smaller (41 kDa) than flagellin protein produced in P. aeruginosa PAK (45 kDa), indicating degradation in E. coli or modification in P. aeruginosa. Comparison of the deduced amino acid sequence of this gene with the amino acid sequences of other flagellins revealed a conservation in the N-and C-terminal domains, suggesting conservation of secretion or assembly signals between these organisms. The sequence 5' of the structural gene contained potential RpoN-specific promoters as well as a promoter sequence recognized by RpoF (if28), the alternative sigma factor required for expression of flagellin genes in E. coli (and Bacillus subtilis). Deletion analysis of the promoter region as well as transcriptional start site mapping implicated the RpoF, and not the RpoN, consensus sequence as the functional promoter for the flagellin gene. Models for the involvement of both RpoN and RpoF in the expression of flagellin in P. aeruginosa are presented.Pseudomonas aeruginosa is one of the more important causative agents of opportunistic infections in humans. To cause disease, this organism needs to express an array of virulence factors, including pili, several excreted proteins and toxins, and functional polar flagella. Nonmotile variants of this organism, lacking flagella, are severely attenuated in their ability to cause disease in animal models (6). Moreover, flagella are a major antigenic determinant for the immune response to P. aeruginosa infection, and antibodies to flagella are protective (6).Flagella are found in many different genera of bacteria, and they are similar in basic structure (32). In general, flagella are anchored to the cell envelope via a basal body, which is connected to a hook structure and then extends to a long helical filament. Whereas a large number of different polypeptides make up the basal body and the hook, the flagellar filament is usually composed of one or two repeating subunits of identical polypeptide monomers, designated flagellins. The biogenesis of flagella in Escherichia coli and other bacteria involves a coordinately controlled interaction of the structural components of the basal body, hook, and filament (15,23,25 We have previously shown that in P. aeruginosa, the rpoN gene product is required for expression not only of pilin but also of flagellin (16,51). RpoN is an alternative sigma factor...