Iraq, including the investigated watershed, has endured destructive floods and drought due to precipitation variability in recent years. Protecting susceptible areas from flooding and ensuring water supply is essential for maintaining basic human needs, agricultural production, and industry development. Therefore, locating and constructing storage structures is a significant initiative to alleviate flooding and conserve excessive surface water for future growth. This study aims to identify suitable locations for Runoff Harvesting (RH) and dam construction in the Hami Qeshan Watershed (HQW), Slemani Governorate, Iraq. We integrated in situ data, remotely sensed images, and Multi-Criteria Decision Analysis (MCDA) approaches for site selection within the Geographical Information Systems (GIS) environment. A total of ten criteria were employed to generate the RH suitability maps, including topographic position index, lithology, slope, precipitation, soil group, stream width, land cover, elevation, distance to faults, and distance to town/city. The weights of the utilized factors were determined via Weighted Linear Combination (WLC) and Analytic Hierarchy Process (AHP). The resulting RH maps were validated through 16 dam sites preselected by the Ministry of Agriculture and Water Resources (MAWR). Findings showed that the WLC method slightly outperformed AHP regarding efficiency and exhibited a higher overall accuracy. WLC achieved a higher average overall accuracy of 69%; consequently, it was chosen to locate new multipurpose dams for runoff harvesting in the study area. The overall accuracy of the 10 suggested locations in HQW ranged between 66% and 87%. Two of these sites align with the 16 locations MAWR has recommended: sites 2 and 5 in the northwest of HQW. It is noteworthy that all MAWR dam sites were situated in medium to excellent RH zones; however, they mostly sat on ineffective geological localities. It is concluded that a careful selection of the predictive factors and their respective weights is far more critical than the applied methods. This research offers decision-makers a practical and cost-effective tool for screening site suitability in data-scarce rugged terrains.