A hybrid scheme is developed for direct numerical simulations of hypersonic flows over a blunt body. The scheme switches to the first-order AUSMPW+ scheme near the bow shock to provide sufficient dissipation to handle the carbuncle phenomenon. In the smooth part of the computational domain, a sixth-order central scheme with an eighth-order low-pass filter is adopted to provide high spatial accuracy to resolve turbulence. The hybrid scheme is shown to be able to obtain smooth and accurate predictions of laminar hypersonic flows over a blunt body. Using the hybrid scheme, a direct numerical simulation of a Mach 6 hypersonic flow over a circular cylinder is conducted. The result shows the turbulent structures in the near-wall region are well resolved by the hybrid scheme, and the bow shock is also captured without introducing any numerical oscillations. With the boundary layer transition on the cylinder's surface, the simulation indicates that the heat flux peak shifts from the stagnation point to the transitional zone and its peak value is increased by 50%.