Hand-foot-and-month disease (HFMD), especially the enterovirus A71 (EV-A71) subtype, is a major health problem in Beijing, China. Previous studies mainly used regressive models to forecast the prevalence of HFMD, ignoring its intrinsic age groups. This study aims to predict HFMD of EV-A71 subtype in three age groups (0-3, 3-6 and > 6 years old) from 2011 to 2018 using residualconvolutional-recurrent neural network (CNNRNN-Res), convolutional-recurrent neural network (CNNRNN) and recurrent neural network (RNN). They were compared with auto-regressio, global auto-regression and vector auto-regression on both short-term and long-term prediction. Results showed that CNNRNN-Res and RNN had higher accuracies on point forecast tasks, as well as robust performances in long-term prediction. Three deep learning models also had better skills in peak intensity forecast, and CNNRNN-Res achieved the best results in the peak month forecast. We also found that three age groups had consistent outbreak trends and similar patterns of prediction errors. These results highlight the superior performance of deep learning models in HFMD prediction and can assist the decision-makers to refine the HFMD control measures according to age groups. HFMD is a mild gastrointestinal disease, mainly caused by EV-A, EV-B and EV-C species, while the EV-A71 subtype is prone to more serious complications 1. Spatial and temporal patterns of HFMD incidence are strongly correlated with climatic factors 2-4 , e.g. high-level humidity and middle-level temperatures. Social factors also affect the spread of HFMD, e.g. contact amongst children in school 5. Under the influences of multi-type pathogenic viruses, complex climatic and social factors, HFMD presents a periodic outbreak in the Asia-Pacific region 1,5. In China, the incidence and mortality of HFMD have been leading the type C infectious diseases since its severe outbreak in 2008 and the situation is getting worse. Beijing city, the capital of China, is also vastly threatened by HFMD 6. Studies have explored the predominant virus 6,7 , weather factors 8,9 and space-time patterns 10 of HFMD in Beijing. Vaccines that prevent EV71-associated HFMD have been developed, but HFMD wouldn't be eliminated because of many other pathogens. Therefore, forecasting the prevalence of HFMD in Beijing is still essential for public health. Many previous studies used regressive models to predict the incidence of HFMD 11-16. In addition to the HFMD incidence data, search index, temperature records, air quality and other exogenous variables were applied to fit the regressive models. Although these methods had achieved acceptable prediction accuracies, there are still some limitations. First, these works only focused on the total number of cases. They ignored the intrinsic age groups in children. In fact, children aged 0 to 6 are the most susceptible to HFMD, while children over the age of 6 have stronger immunities to HFMD. So, under the effect of epidemic transmission dynamics and immunity, there are connections among inc...