The NifU protein is a homodimer that is proposed to provide a molecular scaffold for the assembly of The Azotobacter vinelandii NifU protein is an ϳ60-kDa homodimer proposed to provide a molecular scaffold for formation of [Fe-S] clusters or Fe-S cluster precursors required for full activation of the nitrogenase catalytic components (1, 2). Primary sequence comparisons among NifU homologs indicate that it is a modular protein having three distinct domains (3,4). The N-terminal domain includes three cysteine residues conserved among all known NifU and NifU-like proteins. Incubation of the recombinantly expressed NifU N-terminal domain with NifS (a cysteine desulfurase), L-cysteine, and Fe 2ϩ results in formation of labile [2Fe-2S] clusters on the NifU fragment, providing evidence that this domain could provide a scaffold for assembly of "transient" [Fe-S] clusters destined for nitrogenase activation (2). In support of this hypothesis biochemical and genetic studies established that individual substitution of any of the three cysteine residues contained in the N-terminal domain of NifU impaired but did not eliminate the physiological maturation of the nitrogenase component proteins (3).It was subsequently shown that the N-terminal NifU domain is highly homologous to a small protein designated IscU (5). IscU also contains three conserved cysteines and can provide a scaffold for the sequential in vitro assembly of [2Fe-2S] and [4Fe-4S] clusters when incubated with IscS (a NifS cysteine desulfurase homolog), L-cysteine, and Fe 2ϩ (6, 7). The IscS and IscU proteins together with a suite of other proteins, IscA, HscB, HscA, and Fdx, whose corresponding genes are clustered on both the A. vinelandii and Escherichia coli genomes, have been shown by genetic experiments using E. coli to be involved in the maturation of a variety of Fe-S cluster-containing proteins involved in intermediary metabolism, such as aconitase and glutamate synthase (8 -11). In the case of A. vinelandii, the iscSUAhscBAfdx gene cluster cannot be deleted because this gene cluster is essential under growth conditions for which the nif-specific genes are either expressed or not expressed (5). Thus, under nitrogen fixing conditions NifU is apparently unable to effectively substitute for IscU function. Similarly, NifU deletion strains are severely impaired in their capacity for diazotrophic growth, indicating that IscU cannot effectively replace the function of NifU (12). In contrast, the iscSUAhscBAfdx genes are not essential in E. coli because there is some redundant function provided by another [Fe-S] cluster assembly apparatus encoded by sufABCDSE. Elegant genetic studies have demonstrated that the E. coli iscSUAhscBAfdx genes are essential in the absence of sufABCDS and vice versa (13). Although the A. vinelandii genome encodes proteins homologous to SufSE, recently shown to encode a two-component cysteine desulfurase (14 -16), it clearly does not contain homologs to sufBCD, which probably explains why the "isc" gene cluster is essential in this o...