Background
Stool DNA testing in inflammatory bowel disease (IBD) patients may detect colorectal cancer and advanced precancers with high sensitivity; less is known about the presence of DNA markers in small IBD lesions, their association with metachronous neoplasia, or contribution to stool test positivity.
Methods
At a single center in two blinded phases, we assayed methylated BMP3 (mBMP3), NDRG4 (mNDRG4), and mutant KRAS in DNA extracted from paraffin-embedded benign lesions and matched control tissues of IBD patients, who were followed for subsequent colorectal dysplasia. Stool samples from independent cases and controls with lesions <1cm or advanced neoplasms were assayed for the same markers.
Results
Among IBD lesions (29 low-grade dysplasia (LGD), 19 serrated epithelial change (SEC), 10 sessile serrated adenoma/polyps), the prevalence of methylation was significantly higher than in mucosae from 44 matched IBD controls (p <0.0001 for mBMP3 or mNDRG4). KRAS mutations were more abundant in SEC than all other groups (p<0.001). Subsequent dysplasia was not associated with DNA marker levels. In stools, the sensitivity of mBMP3 as a single marker was 60% for all lesions <1cm, 63% for LGD ≥1cm and 81% for high-grade dysplasia/CRC, all at 91% specificity (p<0.0001).
Conclusions
Selected DNA markers known to be present in advanced IBD neoplasia can also be detected in both tissues and stools from IBD patients with small adenomas and serrated lesions. Mutant KRAS exfoliated from SEC lesions might raise false-positive rates. These findings have relevance to potential future applications of stool DNA testing for IBD surveillance.