The two isoforms of the mammalian mitochondrial phosphate carrier (PiC), A and B, differing in the sequence near the N terminus, arise from alternative splicing of a primary transcript of the PiC gene (Dolce, V., Iacobazzi, V., Palmieri, F., and Walker, J. E. (1994) J. Biol. Chem. 269, 10451-10460). To date, the PiC isoforms A and B have not been studied at the protein level. To explore the tissue-distribution and the potential functional differences between the two isoforms, polyclonal site-directed antibodies specific for PiC-A and PiC-B were raised, and the two bovine isoforms were obtained by expression in Escherichia coli and reconstituted into phospholipid vesicles. Western blot analysis demonstrated that isoform A is present in high amounts in heart, skeletal muscle, and diaphragm mitochondria, whereas isoform B is present in the mitochondria of all tissues examined. Heart and liver bovine mitochondria contained 69 and 0 pmol of PiC-A/mg of protein, and 10 and 8 pmol of PiC-B/mg of protein, respectively. In the reconstituted system the pure recombinant isoforms A and B both catalyzed the two known modes of transport (P i /P i antiport and P i /H ؉ symport) and exhibited similar properties of substrate specificity and inhibitor sensitivity. However, they strongly differed in their kinetic parameters. The transport affinities of isoform B for phosphate and arsenate were found to be 3-fold lower than those of isoform A. Furthermore, the maximum transport rate of isoform B is about 3-fold higher than that of isoform A. These results support the hypothesis that the sequence divergence between PiC-A and PiC-B may have functional significance in determining the affinity and the translocation rate of the substrate through the PiC molecule.The transport of inorganic phosphate across the inner mitochondrial membrane into the matrix compartment is essential for the oxidative phosphorylation of ADP to ATP. This transport is catalyzed by the phosphate carrier (PiC) 1 which has been purified from different sources and reconstituted into liposomes in an active form (1-4). In the reconstituted system the native bovine PiC protein catalyzes the P i /H ϩ symport as well as the P i /P i exchange, which functions by a sequential mechanism (5). The primary structure of the mature PiC is made up of three tandemly related domains about 100 amino acids in length (6). These repetitive elements are related to those found in the other well characterized members of the mitochondrial carrier family (see Refs. 7-10 for reviews) (11,12). They are also found in a number of other proteins of known sequence but of unknown function, which therefore belong to the same protein superfamily (7-10). By examination of the transmembrane topography of the PiC in the inner mitochondrial membrane, it has been proposed that both the N-and C-terminal regions of the PiC protrude toward the cytosol and that the polypeptide chain spans the membrane six times (13). Only one gene for the PiC has been detected in man and cow (14), of which the human one has...