Members of the Fusarium solani species complex (FSSC) are increasingly implicated as the causative agents of human mycoses, particularly in the expanding immunocompromised and immunosuppressed patient populations. Best known as ubiquitous plant pathogens and saprotrophs, the FSSC comprises over 45 phylogenetically distinct species distributed among three major clades. To identify which species are associated with human infections, we generated multilocus haplotypes based on four partial gene sequences from 471 isolates. Of these, 278 were from human patients, 21 were from hospital environments, and 172 were from other sources. Phylogenetic trees inferred from an ergosterol biosynthesis gene (erg-3) were highly discordant with those inferred from the three other partial gene sequences; therefore, this partition was analyzed separately. Multilocus analysis showed that isolates from humans were restricted to but spread throughout clade 3 of the FSSC phylogeny, comprising at least 18 phylogenetically distinct species. The majority (74.5%) of the clinical isolates, however, were associated with four major lineages, designated groups 1 to 4. Groups 1 and 2 were strongly supported as phylogenetic species, whereas groups 3 and 4 were not. Although isolates from ocular infections were found in all four groups, they had a significant tendency to belong to group 3 (P < 0.001). Human clinical isolates shared identical multilocus haplotypes with isolates from plants, other animals, and from hospital environments, suggesting potential nosocomiality. The major finding of this study is that FSSC-associated mycoses of humans and other animals have origins in a broad phylogenetic spectrum, indicating widespread ability to cause infection in this diverse species complex.Fusarium solani is one of the most frequently isolated fungi from soil and plant debris and is also associated with serious invasive mycoses in immunocompromised and immunosuppressed patients (3,18). This species, as defined based on morphology, is actually a diverse complex of over 45 phylogenetic and/or biological species (13 and this study), termed the Fusarium solani species complex (FSSC). These morphologically similar species are generally identified broadly under the name F. solani (12). They are ubiquitous in soil and decaying plant material, where they act as decomposers, but they are also host-specific pathogens of a number of agriculturally important plants, including pea, cucurbits, and sweet potato. Moreover, they are increasingly associated with opportunistic infections of humans and other animals, causing systemic infections with a high mortality rate (8), as well as localized infections in the skin and other body parts (5, 6). In immunocompetent patients, FSSC isolates are mainly known from mycotic keratitis subsequent to traumatic introduction of inoculum. Neutropenic patients, a category of particularly strongly immunocompromised patients, are susceptible to dissemination of infection from superficial or subcutaneous initiation; such infections ar...