Peripherin/rds (P/rds) is a disk rim protein that assembles into homo and hetero complexes with its nonglycosylated homologue, Rom-1, to maintain the integrity of the photoreceptor outer segment. Mutations in the rds gene have been identified in a variety of human retinal degenerative diseases. More than 70% of these mutations are located in the second intradiscal (D2) loop, highlighting the functional importance of this region. This study examines the involvement of different regions of the D2 loop in protein associations using a GST pull-down assay and a heterologous coexpression system. The pull-down assay suggests an association of the N-terminal portion (Phe 120 -Phe 187 ) of the D2 loop with Rom-1 as well as with other P/rds molecules. Through peptide competition experiments, the region between Cys 165 and Asn 182 of the D2 loop has been identified as the domain for these associations. In a COS-1 cell heterologous expression system, coexpression of the D2 loop along with the intact P/rds and Rom-1 hindered the association of the two full-length proteins. In contrast to the homo association of P/rds molecules, it seems that the hetero association of P/rds with Rom-1 has a more stringent structural requirement. This work defines the crucial domain of the D2 loop, which mediates homo and hetero associations, specifically the regions that lay between Cys 165 and Asn 182 . Elucidation of the molecular mechanisms behind the protein-protein associations of P/rds and its partners may reveal the pathogenic defects arising from the most common mutations in this gene.Peripherin/rds (P/rds) 1 is a membrane-bound glycoprotein localized along the rim region of disks found in rod and cone outer segments (OSs) (1,2). The importance of this protein was established by a naturally occurring null mutation in the rds gene, identified as retinal degeneration slow (rds). Mice homozygous for this mutation fail to develop OS structures (3,4), while heterozygous rds mice form highly disorganized OSs (5,6). The role of P/rds in photoreceptor integrity has been demonstrated through the link between mutations in the rds gene and human retinal degenerative diseases such as autosomal dominant retinitis pigmentosa (ADRP) and several forms of macular dystrophy (MD) (7-10). Although P/rds possesses a clear role in maintaining the structure of rods and cones, insights into its molecular mechanism through protein interactions are quite limited. Currently, P/rds is conjectured to play a significant role in disk morphogenesis and stability (1,11), disk shedding (1,12), and membrane fusion (13,14 Cloning and identification of P/rds orthologs suggests that these proteins share several distinctive features, including four hydrophobic transmembrane domains, a large intradiscal (D2) loop containing seven highly conserved cysteines, and a highly charged cytosolic Cterminal segment (4,15,16). Over 70% of the disease-causing mutations in P/rds are located in the D2 loop, providing evidence of the importance that this region plays in proper pro...