“…We also identified three activated populations (Th stim ) defined by the expression of HMGB2 and STMN1 (48,49) and distinguished from each other by the expression of histone markers (Th stim,histone , 19,920 cells, 12%), cell cycling markers PTTG1 (50,51) and KIAA0101 (52-54) (Th stim,cycling , 16,905 cells, 10%), and naive markers CCNB1 (55) (T stim,naive , 12,345 cells, 7.4%). We also found a proliferating population (T prolif ) that expressed genes associated with tumor progression, including FXYD5 (56)(57)(58), LIMD2 (59,60), and PFDN5 (61) (903 cells, 0.05%). Finally, we identified two small clusters likely to be transitional, as they are intermediates in lineage trajectory (62) space either between naive and cytotoxic cells (T naive→cyto 752 cells, 0.04%) or between naive and stimulated cells (T naive→stim : 172 cells, 0.01%; Fig.…”