dRNA binding proteins (RBPs) are increasingly recognized as essential factors in tissue development and homeostasis. The polypyrimidine tract binding (PTB) protein family of RBPs are important posttranscriptional regulators of gene expression. In the nervous system, the function and importance of PTB protein 2 (Ptbp2) as a key alternative splicing regulator is well established. Ptbp2 is also abundantly expressed during spermatogenesis, but its role in this developmental program has not been explored. Additionally, the importance of alternative splicing regulation in spermatogenesis is unclear. Here, we demonstrate that Ptbp2 is essential for spermatogenesis. We also describe an improved dual fluorescence flow cytometry strategy to discriminate, quantify, and collect germ cells in different stages of development. Using this approach, in combination with traditional histological methods, we show that Ptbp2 ablation results in germ cell loss due to increased apoptosis of meiotic spermatocytes and postmeiotic arrest of spermatid differentiation. Furthermore, we show that Ptbp2 is required for alternative splicing regulation in the testis, as in brain. Strikingly, not all of the alternatively spliced RNAs examined were sensitive to Ptbp2 loss in both tissues. Collectively, the data provide evidence for an important role for alternative splicing regulation in germ cell development and a central role for Ptbp2 in this process.T issue-restricted RNA binding proteins (RBPs) have central roles in posttranscriptional regulatory events necessary for tissue development and the specialization of cell functions. Through interactions with nascent transcripts, RBPs can impact alternative splicing and polyadenylation, two highly regulated processes that permit genes to generate multiple RNA isoforms with different combinations of coding and noncoding sequences. Further proteome diversity and control are imparted by RBPs that act on mature mRNAs to alter stability and translation. Accordingly, changes in the levels/activity of specific RBPs underlie key transcriptome and proteome remodeling events that drive multiple developmental pathways (1, 2).The polypyrimidine tract binding (PTB) proteins are among a group of multifunctional RBPs that have key roles in tissue-specific posttranscriptional programs (3-5). While Ptbp1 is expressed in most tissues, Ptbp2 (also called brain or neuronal PTB protein [br/nPTB]) is more tissue restricted, with high levels of expression in brain and testis (6-8). Despite their high sequence similarity, Ptbp1 and Ptbp2 regulate the alternative splicing (AS) of overlapping but nonredundant sets of mRNA targets, with some AS exons more strongly repressed by one PTB protein paralog than the other (9-12). Accordingly, a switch in PTB protein expression from Ptbp1 to Ptbp2 is associated with changes in the expression of AS isoforms during neuronal differentiation (9, 10). Ptbp2 is an essential AS factor in the developing nervous system, where it has a prominent role in repressing AS exons that are enriched i...