Genetic characterization of peste des petits ruminants virus (Pakistani isolates) and comparative appraisal of diagnostic assays

Abstract

This study was designed to characterize N gene sequences of peste des petits ruminants virus (PPRV) isolates circulating in Pakistan and to evaluate the efficacy of available diagnostic assays on local isolates. During the study period, a total of sixty PPR outbreaks were investigated. A total of 20 selected samples from these outbreaks were sequenced for N gene. The result analysis and the phylogenetic trees indicated two different viral groups in N gene: one was closer to China and Tajikistan, while other group was similar to isolates from Iran and Saudi Arabia. Efficacy of three commercially available tests for the antigen detection of PPR, that is, peste test, enzyme‐linked immunosorbent assay (ELISA) and reverse transcriptase‐polymerase chain reaction (RT‐PCR) was compared. Keeping PCR as gold standard, sensitivity was calculated as 85% and 57% and specificity was calculated as 83% and 79% for ELISA and peste test, respectively. Value of K for ELISA was 0.67 which indicates good agreement between ELISA and RT‐PCR. Value of K for peste test was 0.33 which indicates fair agreement between peste test and RT‐PCR. In conclusion, study provides premier information about the use of different diagnostic tests and molecular situation of PPRV in Pakistan.

Virological Diagnoses of Pesti des petitis Ruminants Virus in Sheep in Giza Governorate

“…Depending on Manzoor et al [37]base rule'sto select a suitable diagnostic test; in which the onewith at least 95% sensitivity and 75% specificity is preferable to rule out a disease, while the test with at least 95% specificity and 75% sensitivity is used to confirm the disease.In our study, the seropositive samples swabs (nasal, n=13; ocular, n=14)that analysed by IC-ELISA and further tested through one-step RT-PCR showed quite homology (100%) between them. This findings are in line with that ofManzoor et al [37]who obtained a good agreement between both tests. This result is also agreed with OIE manual, in which both tests are considered the most widely used assays.…”

Transboundary Animal Diseases, an Overview of 17 Diseases with Potential for Global Spread and Serious Consequences

“…Co-infections of PPR and goatpox have been reported [505,506]. The integration of tests and improved molecular tools may help with the rapid and accurate identification of enzootic and outbreak PPR [507][508][509]. Pen-side tests and non-invasive sample techniques may improve diagnosis in remote settings and wildlife [492,507,510,511].…”