Genetic diversity and relationship assessment of Lilium lancifolium × Asiatic hybrid ‘Chianti’ progeny by ISSR markers

Ramzan, Fahad; Kim, Hyoung Tae; Shim, Kyung-ku; Choi, Yu Hyeon; Younis, Adnan; Lim, Ki-Byung

doi:10.17660/ejhs.2018/83.3.3

Cited by 7 publications

(4 citation statements)

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“…Such inheritance structures can be checked and recorded. The development of linkage maps (genetic structure) usually includes the assembly of markers in a pattern that reflects genetic diversity and linkage assemblies based upon a recombination assessed by genotypes of hybrid plants [ 16 , 17 ]. Therefore, the objective of this review is to describe the impacts of abiotic stress on agricultural crops and associated DNA markers for genetic control, gene mapping, and the screening of stress resistance traits.…”

Section: Introductionmentioning

confidence: 99%

Molecular Markers Improve Abiotic Stress Tolerance in Crops: A Review

Younis

Ramzan

et al. 2020

Plants

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Plants endure many abiotic stresses, such as temperature (heat or frost), drought, and salt. Such factors are primary and frequent stressors that reduce agriculture crop yields. Often alterations in nutrient management and constituents, along with variations in biosynthetic capacity, ultimately reduce or halt plant growth. Genetically, stress is an environmental condition that interferes with complete genetic expression. A vast range of molecular genomic markers is available for the analysis of agricultural crops. These markers are classified into various groups based on how the markers are used: RAPD (Random amplified polymorphic DNA) markers serve to identify and screen hybrids based on salinity and drought stress tolerance, while simple sequence repeat (SSR) markers are excellent for the assessment of stress tolerance. Such markers also play an important role in the QTL (Quantitative trait loci) mapping of stress-related genes. Dehydrins for drought and saltol for salinity stresses are primitive genes which regulate responses to these conditions. Further, a focus on traits using single-gene single nucleotide polymorphisms (SNP) markers supports genetic mapping and the sequencing of stress-related traits in inbred lines. DNA markers facilitate marker-assisted breeding to enhance abiotic stress tolerance using advanced techniques and marker modification.

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Section: Introductionmentioning

confidence: 99%

Molecular Markers Improve Abiotic Stress Tolerance in Crops: A Review

Younis

Ramzan

et al. 2020

Plants

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“…Such genetic component may be analyzed and documented. The creation of molecular maps and genetic structure, as well as the composition of markers in a pattern that depicts genetic diversity and linkage assemblies based on recombination identified in hybrid plant genotypes [30,22]. Additionally, hybrids discovered between common tomato and wild species were employed to harmonize horticultural characteristics and for gene mapping.…”

Section: Introductionmentioning

confidence: 99%

Genetic Diversity Analysis of Tomato (Solanum Lycopersicon L.) Hybrids under Drought Tolerant Stress using SSR Markers

M.Sheded

M.Shehata

M.Ahmed

et al. 2022

Benha Journal of Applied Sciences

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Abiotic stressors such as drought are particularly detrimental to tomato vegetative growth and yield. Breeding and selection for drought-tolerant genotypes is a significant strategy for addressing this challenge. In this study, we used ten SSR primers for drought tolerance on six parents of tomato genotypes were the chosen parental genotypes included one wild type, i.e., Solanum pimpenillifolium (LA:411) and five cultivated genotypes Solanum lycopersicum, i. e., Edkawi, Super Marmande, Super Strain B, Castle Rock and Peto 86 and their fifteen crosses. Five primers were succeful and observed positive and negative markers for drought tolerance. Genetic diversity was estimated to be between 0.485 and 0.947 using SSR data, while there was very high genetic similarity (0.999) between (F 1 8 and F 1 7) (super Marmande x LA:411 and super Marmande x Edkawi) respectively. LA:411 and Edkawi could be source of drought tolerance.

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“…ISSR is one of the simplest and most widely used PCR-based marker techniques that amplifies DNA segments between two identical microsatellite repeat regions (Marimuthu Somasundaram et al, 2019). However, among molecular markers, ISSR markers have some advantages comparing to low reproducibility of RAPD markers, high cost of the AFLP markers and the limitations of the complex SSR markers (Ramzan et al, 2018). The chloroplast is an important organelle for green plants where photosynthesis and carbon fixation take place (Zhou et al, 2019).…”

Section: Introductionmentioning

confidence: 99%

Molecular Genetic Diversity of Prunus armeniaca L. (Rosaceae) Genotypes by RAPD, ISSR-PCR, and Chloroplast DNA (cpDNA) trnL-F Sequences

Sevindik

Murathan

Sevindik

2020

International Journal of Fruit Science

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In this study, phylogenetic analysis of some Turkish Prunus armeniaca L. genotypes was conducted based on RAPD-PCR, ISSR-PCR, and chloroplast DNA (trnL-F) sequence analyses. Prunus armeniaca genotypes were obtained from Malatya province, and brought to the laboratory for genomic DNA isolation. Eleven RAPD and fifteen ISSR primers were used to determine molecular characterization of Prunus armeniaca genotypes. For the amplification of the trnL-F region, trne and trnf primers were used in Polymerase Chain Reaction (PCR). A total of 46 and 95 bands were obtained with RAPD and ISSR analysis, respectively. The trnL-F sequences varied from 398 to 403 nucleotides. Average nucleotide composition of trnL-F sequences was 31.0% T, 14.4% C, 37.4% A and 17.2% G. The genetic distance between the five apricot genotypes is 0.00. A maximum likelihood tree was generated to determine genetic relationships among Prunus armeniaca genotypes. Analysis of Prunus armeniaca genotypes based on RAPD, ISSR, and trnL-F sequences revealed that the rate of polymorphism obtained using RAPD and ISSR were higher than those obtained through the trnL-F sequences.

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Genetic diversity and relationship assessment of Lilium lancifolium × Asiatic hybrid ‘Chianti’ progeny by ISSR markers

Cited by 7 publications

References 50 publications

Molecular Markers Improve Abiotic Stress Tolerance in Crops: A Review

Molecular Markers Improve Abiotic Stress Tolerance in Crops: A Review

Genetic Diversity Analysis of Tomato (Solanum Lycopersicon L.) Hybrids under Drought Tolerant Stress using SSR Markers

Molecular Genetic Diversity of Prunus armeniaca L. (Rosaceae) Genotypes by RAPD, ISSR-PCR, and Chloroplast DNA (cpDNA) trnL-F Sequences

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