In most yeast species, the mitochondrial DNA (mtDNA) has been reported to be a circular molecule.However, two cases of linear mtDNA with specific termini have previously been described. We examined the frequency of occurrence of linear forms of mtDNA among yeasts by pulsed-field gel electrophoresis. Among the 58 species from the genera Pichia and Wiliopsis that we examined, linear mtDNA was found with unexpectedly high frequency. Thirteen species contained a linear mtDNA, as confirmed by restriction mapping, end labeling, and electron microscopy. The mtDNAs from Pichia pijperi, WiUliopsis mrakii, and P. jadinii were studied in detail. In each case, the left and right terminal fragments shared homologous sequences. Between the terminal repeats, the order of mitochondrial genes was the same in all of the linear mtDNAs examined, despite a large variation of the genome size. This constancy of gene order is in contrast with the great variation of gene arrangement in circular mitochondrial genomes of yeasts. The coding sequences determined on several genes were highly homologous to those of the circular mtDNAs, suggesting that these two forms of mtDNA are not of distant origins.Mitochondria have their own DNA which specifies several proteins of the respiratory complexes as well as mitochondrion-specific rRNAs and tRNAs. While the majority of these genomes seem to be circular, some organisms have been shown to have a linear mitochondrial DNA (mtDNA). Well-known examples are those of the ciliates of the genera Paramecium (7) and Tetrahymena (17). The first case of a linear mtDNA in yeasts was found in 1981 in Wlliopsis mrakii (formerly called Hansenula mrakii) (19). A second case was reported for a yeast identified as Candida parapsilosis (8; see also reference 1). Occurrence of linear DNAs in yeast mitochondria raises questions about their origin and mode of replication. In a number of other organelle genomes, linear forms of DNA have also been described, although in some cases, the reality of the linearity might be questioned because the terminal structure of these forms has not been defined. The evolutionary and taxonomical positions of these linear genomes with respect to the circular forms need to be clarified. These linear DNAs may replicate as a linear molecule, or they may replicate through circular intermediates. In this study, we examined (i) the frequency of the linear forms of mtDNAs among yeast species and (ii) whether they have any basic structures in common. In the accompanying report (4), we examine their possible modes of replication by analysis of their terminal structure.
MATERIALS AND METHODSYeast strains. Yeast strains were obtained from Centraalbureau voor Schimmelcultures (CBS), Delft, The Netherlands. They are independent isolates of known origins. As a rule, the type strain of each species, as indicated in the CBS 1990 catalog, was chosen for analysis unless otherwise stated. The culture medium contained 1% yeast extract * Corresponding author.