Two malic enzyme alleles, Men113A and Men
113G, occur at approximately equal frequency in North American populations of Drosophila melanogaster, while only Men 113A occurs in African populations. We investigated the population genetics, biochemical characteristics, and selective potential of these alleles. Comparable levels of nucleotide polymorphism in both alleles suggest that the Men 113G allele is not recently derived, but we find no evidence in the DNA sequence data for selection maintaining the polymorphism. Interestingly, the alleles differ in both V max and K m for the substrate malate. Triglyceride concentration and isocitrate dehydrogenase (IDH) and glucose-6-phosphate dehydrogenase (G6PD) activities are negatively correlated with the in vivo activities of the Men alleles. We examined the causality of the observed correlations using P-element excision-derived knockout alleles of the Men gene and found significant changes in the maximum activities of both IDH and G6PD, but not in triglyceride concentration, suggesting compensatory interactions between MEN, IDH, and G6PD. Additionally, we found significantly higher than expected levels of MEN activity in knockout heterozygotes, which we attribute to transvection effects. The distinct differences in biochemistry and physiology between the naturally occurring alleles and between the engineered alleles suggest the potential for selection on the Men locus.
SIGNIFICANT progress has been made in characterizing population variability at the level of DNA sequences, but the central challenge of elucidating rules that connect genotype and phenotype remains. In many cases, genotype may give rise to phenotype through interactions among multiple genes and metabolite intermediates. Presumably, these interactions are at least partly the product of natural selection. The challenge, however, is not to simply infer the presence of selection, but to elucidate its action and distribution across such multiple gene networks. In this study we begin an analysis of the variation and functional interactions among three oxidative enzymes known to be the primary source of the reduced form of the metabolic cofactor NADP.A single amino acid polymorphism was identified in cytosolic malic enzyme (Men) as part of a study of geographic variation of single-nucleotide polymorphisms associated with the genes of central metabolic enzymes in Drosophila melanogaster (Sezgin et al. 2004). The polymorphism is an alanine-to-glycine substitution at amino acid 113 and the two alleles defined by the amino acid substitution occur in approximately equal frequency in all 10 North American populations examined. Allele frequency clines were detected at a number of other metabolic genes, but these Men alleles and associated haplotypes showed no clinal changes with latitude. While the presence of clinal change in allele frequency can be interpreted as evidence for selection on a locus, the lack of such a pattern does not indicate that a polymorphism is necessarily neutral. Here we examine other as...