Genetic Variation of Eight Indonesian Swamp-Buffalo Populations Based on Cytochrome b Gene Marker

Rusdin, Muh.; Solihin, Dedy Duryadi; Gunawan, Asep; Talib, Chalid; Sumantri, Cece

doi:10.5398/tasj.2020.43.1.1

Cited by 14 publications

(18 citation statements)

References 26 publications

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“…Colli et al (2018) explained buffaloes from China migrate from the Philippines to South Sulawesi, causing more similarity between buffaloes in the Philippines and those in South Sulawesi. Rusdin et al (2020) found two clusters of swamp buffaloes from South East Sulawesi that were different clusters from swamp buffaloes in Banten, West Nusa Tenggara, and Aceh. Moreover, it was reported that there was a genetic closeness in swamp buffaloes from the Philippines, South Sulawesi, and Southeast Sulawesi.…”

Section: Discussionmentioning

confidence: 77%

Genetic Diversity of Indonesian Swamp Buffalo Based on Microsatellite Markers

Saputra¹,

Jakaria

Anggraeni³

et al. 2020

Trop. Anim. Sci. J.

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Indonesia has high genetic resources of local swamp buffalo with good adaptation across regions. However, these animals decline in both population and genetic quality. This research was conducted to study the genetic diversity of Indonesian swamp buffalo. A total of 199 DNA samples (swamp buffalo) from seven provincial populations were used in this study. Genetics identification used three microsatellite markers (CSSM66, ILSTS61, and ILSTS17). Microsatellites were visualized by Polyacrylamide Gel Electrophoresis (PAGE) 10% with silver staining method. Microsatellite data were analyzed using GenAlEx 6.41, Cervus 3.0, and POPTREE2 software. The results showed that a total of 9 alleles were found from the three loci. ILSTS61 had a high PIC (Polymorphism Information Content) compared to the other loci. The high observed heterozygosity of ILSTS61 was found in swamp buffalo from Riau Province, while the Ho value of ILSTS17 ranged from 0.000 to 0.170. This study identified two clusters for Indonesian swamp buffalo, i.e., cluster I (Aceh, North Sumatra, and Riau) and cluster II (Banten, Central Java, West Nusa Tenggara, and South Sulawesi). The two major divergent directions are considered in Indonesia swamp buffaloes across the observed provinces.

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Section: Discussionmentioning

confidence: 77%

Genetic Diversity of Indonesian Swamp Buffalo Based on Microsatellite Markers

Saputra¹,

Jakaria

Anggraeni³

et al. 2020

Trop. Anim. Sci. J.

Self Cite

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“…The data used were base positions 70 to 747 (678 bp) of Cytochrome B gene based on GenBank reference (D82894). We used those base positions to accommodate the length of cytochrome B gene sequence of swamp buffalo from Indonesia based on the result reported by Rusdin et al (2020). Sequences data were analyzed using the DnaSP v6 program to determine the haplotypes and haplotype diversity (Rozas et al, 2017).…”

Section: Methodsmentioning

confidence: 99%

“…Indonesia 78 (Rusdin et al, 2020) 61 haplotypes, and the haplotype diversity was 0.7020 with 62 polymorphic sites. The smallest haplotype diversity was found in Taiwan (0.1970), and the highest was found in India (1.0000).…”

Section: Bubalus Bubalismentioning

confidence: 98%

Haplotype Diversity of Swamp Buffalo and River Buffalo Based on Cytochrome B Gene: A Study of Meta-Analysis

Saputra¹,

Anggraeni²,

Ishak³

et al. 2021

Trop. Anim. Sci. J.

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“…The age at first calving of Kuntu buffalo (54 ± 1.7 months) was greater than the Thai buffalo (47.1 months) (Chaikhun et al 2012), Brazil Buffalo (41.67 months) (Marques et al 2020), Murrah buffalo in India (52.62 months) (Thiruvenkadan et al 2015). This difference age at first calving is influenced by differences in maintenance management and feed management (Rusdin et al 2020). Bindari et al (2013) stated that nutritional adequacy will affect changes in livestock reproduction.…”

Section: Reproductive Efficiency Of Kuntu Buffalomentioning

confidence: 99%

Reproduction performance, morphometric and structure population of Kuntu buffalo (Bubalis bubalis Merr) in Kampar District, Riau, Indonesia

et al. 2021

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Abstract. Yendraliza, Rodiallah M, Zumarni, Elfawati, Hidayati, Kusnadi. 2021. Reproduction performance, morphometric and structure population of Kuntu buffalo (Bubalis bubalis Merr) in Kampar District, Riau, Indonesia. Biodiversitas 22: 3370-3377. Kuntu buffalo is one of the germplasm of Riau Province. This study aimed was to determine reproduction performance, potential output, population dynamics, and morphometrics of Kuntu buffalo in Kampar Kiri, Indonesia. The research was conducted in July-October 2019 with materials used in the study were 2.746 buffalo and 1.117 buffalo breeders. The research method used was a survey. The respondents from five locations were determined using a purposive sampling technique. The age at first mating of buffalo 42 ± 0.7 months, the S/C 2.6 ± 1.5 times, calving interval 15.3 ± 2.3 months and calving rate 55.59%. The reproductive efficiency of Kuntu buffalo 96.22%, a natural increase of 55.59%, the net replacements rates (male and female) were 289.60% and 446.59%, respectively and potential output of 39.24% was obtained. The population dynamics of the Kuntu buffalo from 2014 to 2019 experienced a growth of 48% with prediction of the population in 2023 is 7.277 heads. The average body size of male and female Kuntu buffalo is small. The conclusion of Kuntu buffalo reproduction is still efficient with the availability of substitute livestock exceeding the need of livestock and the natural increase of Kuntu buffalo population is very high.

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Genetic Variation of Eight Indonesian Swamp-Buffalo Populations Based on Cytochrome b Gene Marker

Cited by 14 publications

References 26 publications

Genetic Diversity of Indonesian Swamp Buffalo Based on Microsatellite Markers

Genetic Diversity of Indonesian Swamp Buffalo Based on Microsatellite Markers

Haplotype Diversity of Swamp Buffalo and River Buffalo Based on Cytochrome B Gene: A Study of Meta-Analysis

Reproduction performance, morphometric and structure population of Kuntu buffalo (Bubalis bubalis Merr) in Kampar District, Riau, Indonesia

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