2020
DOI: 10.1016/j.mcp.2020.101512
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Genome-wide analysis of mRNAs and lncRNAs in Mycoplasma bovis infected and non-infected bovine mammary gland tissues

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Cited by 20 publications
(25 citation statements)
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“…Bowtie2 (v2.2.5) was used to generate the index of the reference genome, and alignment of paired-end clean reads to the reference genome was performed with HISAT2 (v2.1.0). The assembly of mapped transcripts for each sample was performed with Scripture (beta2) and Cu inks (v2.1.1) in a reference-based approach [15].…”
Section: Reference Genome Alignment and Genome-wide Reads Distributiomentioning
confidence: 99%
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“…Bowtie2 (v2.2.5) was used to generate the index of the reference genome, and alignment of paired-end clean reads to the reference genome was performed with HISAT2 (v2.1.0). The assembly of mapped transcripts for each sample was performed with Scripture (beta2) and Cu inks (v2.1.1) in a reference-based approach [15].…”
Section: Reference Genome Alignment and Genome-wide Reads Distributiomentioning
confidence: 99%
“…In order to predict the targets of lncRNAs in MAC-T cells and thus understand potential functions of lncRNAs. Method as in previous research [15]. Firstly, we searched the 10 k/100 k coding genes upstream and downstream of lncRNA to nd cis role lncRNA.…”
Section: Prediction Of Lncrna-gene Interactionsmentioning
confidence: 99%
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