2022
DOI: 10.3389/fpls.2022.902464
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Genome-Wide Association Study of Resistance to Phytophthora capsici in the Pepper (Capsicum spp.) Collection

Abstract: One of the most serious pepper diseases is Phytophthora blight, which is caused by Phytophthora capsici. It is crucial to assess the resistance of pepper genetic resources to Phytophthora blight, understand the genetic resistances, and develop markers for selecting resistant pepper materials in breeding programs. In this study, the resistance of 342 pepper accessions to P. capsici was evaluated. The disease severity score method was used to evaluate the phenotypic responses of pepper accessions inoculated with… Show more

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Cited by 20 publications
(15 citation statements)
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“…The previously identi ed QTL.Pc9 was also ~ 1.91 Mb upstream to the signi cant SNP, S9_237909149 detected on chromosome 9 in the present work [8]. In another GWAS, signi cant SNPs were identi ed at 9.14 Mb and 208.4 Mb on chromosomes 7 and 12 respectively, which were ~ 0.11 Mb and ~ 0.91 Mb upstream to the SNPs, S7_9249493 and S12_209274913 detected in this study [30]. A novel major SNP marker, S6_705421 was discovered in this study which accounted for up to 54.4% of the phenotypic variation.…”
Section: Signi Cant Markers Associated With P Capsici Root Rot Resist...supporting
confidence: 71%
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“…The previously identi ed QTL.Pc9 was also ~ 1.91 Mb upstream to the signi cant SNP, S9_237909149 detected on chromosome 9 in the present work [8]. In another GWAS, signi cant SNPs were identi ed at 9.14 Mb and 208.4 Mb on chromosomes 7 and 12 respectively, which were ~ 0.11 Mb and ~ 0.91 Mb upstream to the SNPs, S7_9249493 and S12_209274913 detected in this study [30]. A novel major SNP marker, S6_705421 was discovered in this study which accounted for up to 54.4% of the phenotypic variation.…”
Section: Signi Cant Markers Associated With P Capsici Root Rot Resist...supporting
confidence: 71%
“…Most of the signi cant SNPs identi ed in this research represent potential novel resistance loci which can be targeted in breeding toward resistance. Though chromosome 5 has been known to be the major region with disease resistance loci against P. capsici, this study as well as previous studies have detected genomic regions on other chromosomes which demonstrates the complexity of Phytophthora root rot resistance in chile peppers [8,9,27,30,68,74].…”
Section: Signi Cant Markers Associated With P Capsici Root Rot Resist...supporting
confidence: 51%
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“…Phytophthora capsici Leonian is a notoriously harmful pathogen that can infect more than 60 species of vegetable crops (e.g., pepper, tomato, eggplant, and some melon crops) in the Solanaceous, Cucurbitaceous, and Fabaceous families [ 1 , 2 , 3 ]. Typical symptoms caused by P. capsici on vegetables include stem and fruit rot, wilting, stunting, damping off, and plant death, along with stem and leaf blight [ 4 , 5 ]. It is estimated that P. capsici -induced diseases are responsible for at least $200 million in losses each year [ 6 ].…”
Section: Introductionmentioning
confidence: 99%
“…Notably, they accurately identi ed Capana06g002967 and Capana06g002969 as candidate genes for Rf 16 . Ro et al (2023) employed genotyping-by-sequencing (GBS) and GWAS analysis to identify 57 SNPs signi cantly associated with anthracnose resistance through in 197 C. chinense 17 . In the study of important fruit traits, Du et al (2019) employed the Target SNP-seq genotyping method to locate nine signi cantly associated loci with the fruit shape index among 271 pepper varieties, located on chromosomes 1, 2, 3, 4, 6 and 12 18 .…”
Section: Introductionmentioning
confidence: 99%